PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc012181.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

ERF

Protein Properties

Length: 709aa MW: 80345.6 Da PI: 6.2653

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc012181.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.7	1.2e-17	340	391	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykG+r+++ +g+++Ae+ p + kr+r++lg+f+t+eeAa a+++a+ +l+g Cse_sc012181.1_g010.1 340 TRYKGIRRRP-WGKFAAEVTNP---KkKRTRVWLGTFDTPEEAALAYDKAAFELYG 391 68******.***5554...5467**********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 709 aa Download sequence
RTYGIPVTQH LAPSNLETQH TAPTQPTSSV PLRRSTRNTI APKWLKNFVG PKSSAKLKAR 60 DENSNLKENL RVIDEAIDKG NNSVEMGHKR LETLNKIQKV NNTHMSETAQ KAKIKWIVEG 120 DENSKFFHCM LNKKRNQMSI RGVLVNGSWI EDPVKVKHEF FDHFRNRFNK PSSNRALIDI 180 SFPKVLSNDQ CEDLERMEWR TWMVSIRLPN KLKSMMEGVF YGLWWSIWNF RNKLLFDNKI 240 PKKATFSSDH NDPISVTDWV NMEEPLLPEN IIQDVHDILH SFPPEKITKD TSLTTNGGTL 300 SPGNNSVDAV QQTQVAPESA KKKKMKTSAR GKNAPAVDWT RYKGIRRRPW GKFAAEVTNP 360 KKKRTRVWLG TFDTPEEAAL AYDKAAFELY GSKAKLNFPL LIRVEDQVTN VAAKVSQSLE 420 LPKHVPSTST SSSTSVRKRE RKRQKKNEAD PVVEPTTTTT SGSLEDAGSE CDSLWNFDSD 480 TLIPENFMIT GVGEPEISEA VEVVDLDLSW EFDMNTLTFE HLLDEGVAEP ASAASMDVAE 540 DLPWDVLLDN IVEPPMTTGE QLEVVSTSDS PLEIDIDTSI FENMFGEDMV EESSIAASIM 600 AEESGADHHW LWNYQMDMVN PPSYSYATSI TEEDMTWSRH GTREQGNAGT VGGRSQNRVK 660 TISSNCKTTR WLPDITWNRV ITFQSKLFDP NAWVSRISTW DKTKCMLLN

Sequence ? help Back to Top

Protein Sequence Length: 709 aa Download sequence

RTYGIPVTQH LAPSNLETQH TAPTQPTSSV PLRRSTRNTI APKWLKNFVG PKSSAKLKAR  60
DENSNLKENL RVIDEAIDKG NNSVEMGHKR LETLNKIQKV NNTHMSETAQ KAKIKWIVEG  120
DENSKFFHCM LNKKRNQMSI RGVLVNGSWI EDPVKVKHEF FDHFRNRFNK PSSNRALIDI  180
SFPKVLSNDQ CEDLERMEWR TWMVSIRLPN KLKSMMEGVF YGLWWSIWNF RNKLLFDNKI  240
PKKATFSSDH NDPISVTDWV NMEEPLLPEN IIQDVHDILH SFPPEKITKD TSLTTNGGTL  300
SPGNNSVDAV QQTQVAPESA KKKKMKTSAR GKNAPAVDWT RYKGIRRRPW GKFAAEVTNP  360
KKKRTRVWLG TFDTPEEAAL AYDKAAFELY GSKAKLNFPL LIRVEDQVTN VAAKVSQSLE  420
LPKHVPSTST SSSTSVRKRE RKRQKKNEAD PVVEPTTTTT SGSLEDAGSE CDSLWNFDSD  480
TLIPENFMIT GVGEPEISEA VEVVDLDLSW EFDMNTLTFE HLLDEGVAEP ASAASMDVAE  540
DLPWDVLLDN IVEPPMTTGE QLEVVSTSDS PLEIDIDTSI FENMFGEDMV EESSIAASIM  600
AEESGADHHW LWNYQMDMVN PPSYSYATSI TEEDMTWSRH GTREQGNAGT VGGRSQNRVK  660
TISSNCKTTR WLPDITWNRV ITFQSKLFDP NAWVSRISTW DKTKCMLLN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	346	364	RRRPWGKFAAEVTNPKKKR
2	438	446	KRERKRQKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44840.1	1e-29	ERF family protein