PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc009165.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

M-type_MADS

Protein Properties

Length: 716aa MW: 80739.6 Da PI: 9.117

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc009165.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	53.4	3.2e-17	321	361	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i n+s r+ tf kR++g++KK +ELS+LC+++++ ii+s+ Cse_sc009165.1_g020.1 321 FITNDSARKATFKKRKKGLMKKVNELSTLCGIDACAIIYSP 361 89**************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 716 aa Download sequence
MAGASYGQLN LDESPSWGSR SVDCFEKLEQ IGEGTYGQVY MAREIKTGEI VALKKIRMDN 60 EKEGFPITAI REIKILKKLQ HANVIKLKEI VTSTGPEGDE HVKSGDHFSL ALFSSGHRYK 120 GSIYMVFEYM DHDLTGLADR PGMQFTIPQI KCYMKQLLTG LHYCHVNQVL HRDIKGHCTI 180 SSNLLIDNEG NLKLADFGLA RTYSSDHKGN LTNRVITLWY RPPELLLGAT KYGPTVDMWS 240 VGCIFAELLF GKPILTGKNE ILKTVSEPEL NSITYQTDNR VTINAELQLR NPHIKLPYFC 300 QSFASLGVSV TMTRKKVKLA FITNDSARKA TFKKRKKGLM KKVNELSTLC GIDACAIIYS 360 PYEAQPEVWP NSIGVQRVIA QFKRMPEMEQ SKKMVNQDSF IRQRITKANE QLKKQIKENQ 420 EKEMTEVMYQ CLTGKGSIAN LTLPDLNDLG GLVDQTLKDI CRRIESLKKG VSGSAVTAPL 480 PSQPPRPQAT VAGNSSTTTN EMVKKGAVRH PSEKRLMVDN ASSLDMMQKT QWFADWINNP 540 SEHTIDLGPG FSVTWLILDK TLELSAYETS EFKSSQMYIR EASYPEQLTK IFELCGSPDE 600 IIWPGVSRLP LYHKYQPSRP MKRRVREVFR QFDRNALELL EKMLTLDPLQ RISAKDALDA 660 EYFWVDPLPC DPKSGPRGSS AGYGPGPQNY PQQYGAGGRG PNVPGNRNQQ YNWPQQ

Sequence ? help Back to Top

Protein Sequence Length: 716 aa Download sequence

MAGASYGQLN LDESPSWGSR SVDCFEKLEQ IGEGTYGQVY MAREIKTGEI VALKKIRMDN  60
EKEGFPITAI REIKILKKLQ HANVIKLKEI VTSTGPEGDE HVKSGDHFSL ALFSSGHRYK  120
GSIYMVFEYM DHDLTGLADR PGMQFTIPQI KCYMKQLLTG LHYCHVNQVL HRDIKGHCTI  180
SSNLLIDNEG NLKLADFGLA RTYSSDHKGN LTNRVITLWY RPPELLLGAT KYGPTVDMWS  240
VGCIFAELLF GKPILTGKNE ILKTVSEPEL NSITYQTDNR VTINAELQLR NPHIKLPYFC  300
QSFASLGVSV TMTRKKVKLA FITNDSARKA TFKKRKKGLM KKVNELSTLC GIDACAIIYS  360
PYEAQPEVWP NSIGVQRVIA QFKRMPEMEQ SKKMVNQDSF IRQRITKANE QLKKQIKENQ  420
EKEMTEVMYQ CLTGKGSIAN LTLPDLNDLG GLVDQTLKDI CRRIESLKKG VSGSAVTAPL  480
PSQPPRPQAT VAGNSSTTTN EMVKKGAVRH PSEKRLMVDN ASSLDMMQKT QWFADWINNP  540
SEHTIDLGPG FSVTWLILDK TLELSAYETS EFKSSQMYIR EASYPEQLTK IFELCGSPDE  600
IIWPGVSRLP LYHKYQPSRP MKRRVREVFR QFDRNALELL EKMLTLDPLQ RISAKDALDA  660
EYFWVDPLPC DPKSGPRGSS AGYGPGPQNY PQQYGAGGRG PNVPGNRNQQ YNWPQQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	314	336	RKKVKLAFITNDSARKATFKKRK
2	333	337	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	9e-63	M-type_MADS family protein