PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc008857.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family HD-ZIP
Protein Properties Length: 292aa    MW: 34009.5 Da    PI: 4.577
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc008857.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.5e-1968121356
                            --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            k+++++ +q++ Le+ Fe+++++  e++ +LAk+l+L+ rqV +WFqNrRa+ k
  Cse_sc008857.1_g030.1  68 KKRRLSVDQVQFLEKSFEEENKLEPERKIQLAKELNLQPRQVAIWFQNRRARCK 121
                            566899**********************************************99 PP
2HD-ZIP_I/II127.55.5e-4167158192
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                            ekkrrls +qv++LE+sFeee+kLeperK +la+eL+lqprqva+WFqnrRAR ktkqlEkdy+ L ++yd+lk+e + L+k++e+L+
  Cse_sc008857.1_g030.1  67 EKKRRLSVDQVQFLEKSFEEENKLEPERKIQLAKELNLQPRQVAIWFQNRRARCKTKQLEKDYDILNSSYDKLKSEFDCLQKHNEKLK 154
                            69************************************************************************************** PP

            HD-ZIP_I/II  89 eelk 92 
                            +e++
  Cse_sc008857.1_g030.1 155 HEVQ 158
                            9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    
MEGGMVFGAM LQNQRLNFSS SDQGFDSQWG SNSFHGEKTN TTKSLSGTHE KEENSDEDYG  60
KCFRQPEKKR RLSVDQVQFL EKSFEEENKL EPERKIQLAK ELNLQPRQVA IWFQNRRARC  120
KTKQLEKDYD ILNSSYDKLK SEFDCLQKHN EKLKHEVQML KEKLHQREQD STPNELPTEE  180
LDSNAQETKP SPIPIQTWSN EPKMVICKQE YANSVSTKSD IIDSYSPDGN HSSFLEPCDS  240
SNVFENQSDF SQDEEDNLAI LRCPKIEYES YIDPNEGSLG YPIEDQPFWL WP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116124RRARCKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.19e-45HD-ZIP family protein