PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc008710.1_g020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | LBD | ||||||||
Protein Properties | Length: 260aa MW: 28861.7 Da PI: 7.3849 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.9 | 1.5e-42 | 16 | 115 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrrkC+++Cv+apyfp +qp+kfa vhk++Gasnv kll++l ++reda++sl+yeA+ar+rdPvyG+vg+i+ lq++l+ Cse_sc008710.1_g020.1 16 PCAACKFLRRKCTQECVFAPYFPPDQPQKFAKVHKVYGASNVAKLLSDLGATQREDAVNSLAYEADARLRDPVYGCVGLISILQHRLK 103 7*************************************************************************************** PP DUF260 89 qlkaelallkee 100 q++++l+++k+e Cse_sc008710.1_g020.1 104 QVQNDLETAKRE 115 *******99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence |
MYAAVKVKEK MSTNSPCAAC KFLRRKCTQE CVFAPYFPPD QPQKFAKVHK VYGASNVAKL 60 LSDLGATQRE DAVNSLAYEA DARLRDPVYG CVGLISILQH RLKQVQNDLE TAKRELASYI 120 GPSAMLPILN QGFVLPYNTQ PEPVLGLAAQ HQQQMLKEQQ QQLIGSNGDR EQPEVLRNYD 180 HQHQRLADLL GFGGGLDAVS ASVQATANEF SHMTTATTNA PCLSLGGSYD NVYQIQHHHH 240 HIQPHHMFFQ QQALAPQSAE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 3e-72 | LBD family protein |