PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc008669.1_g010.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 232aa MW: 25966.5 Da PI: 5.4901 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.2 | 7.7e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g+lKKA+EL vLCda+va+iifs tgkl+eyss Cse_sc008669.1_g010.2 9 KKIDNITARQVTFSKRRRGLLKKAQELAVLCDADVALIIFSATGKLFEYSS 59 68***********************************************96 PP | |||||||
2 | K-box | 44.1 | 8.8e-16 | 102 | 172 | 29 | 99 |
K-box 29 enLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 re+R+l+G+dL+ L + eL++Le+ L+ +l+++ + K+e + ++i+ lq+k +l eenk L+++++ Cse_sc008669.1_g010.2 102 ADKSRELRQLQGQDLQGLAIDELEHLETLLQGGLSRVLKAKDERFGNEISSLQEKGAKLLEENKLLKQQMM 172 4446899*************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence |
MAREKIKIKK IDNITARQVT FSKRRRGLLK KAQELAVLCD ADVALIIFSA TGKLFEYSSS 60 SMQEILGKYK LHSNNSLDKV DEPSLNLQLV ESDEVRFCKE IADKSRELRQ LQGQDLQGLA 120 IDELEHLETL LQGGLSRVLK AKDERFGNEI SSLQEKGAKL LEENKLLKQQ MMMISNGKRP 180 RTATDIDNLV ITPEDQGQSS ESVTTNVYSC NSSPPTDDDG SDTSLKLGLP FY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 8e-61 | MIKC_MADS family protein |