PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc008209.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family HD-ZIP
Protein Properties Length: 848aa    MW: 93158.1 Da    PI: 5.9738
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc008209.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.41e-173795357
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
               Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                           k  ++t+eq+++Le++++++++ps  +r++L + +    +++ +q+kvWFqNrR +ek+
  Cse_sc008209.1_g020.1 37 KYVRYTAEQVDALERVYAECPKPSSLRRQQLIRDCpilsNIEPKQIKVWFQNRRCREKQ 95
                           5678*****************************************************97 PP
2START1601.8e-501743812204
                            HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT. CS
                  START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg. 88 
                            +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  ++++ ve+l d+   W +++++ e+l  +  g 
  Cse_sc008209.1_g020.1 174 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIVEILKDRT-SWYRDCRSLEVLTMLPAGn 260
                            68999*****************************************************9999999999.****************999 PP

                            .EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
                  START  89 .galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvd 171
                             g+++l +++ +a+++l+p Rdf+++Ry+ +l  g++v++++S++     p+     ++vR+e+lpSg+li+p+++g+s +++v+h +
  Cse_sc008209.1_g020.1 261 gGTIELVYTQVYAPTTLAPaRDFWTLRYTTSLDNGSLVVCERSLSGSGGGPNaasATQFVRGEMLPSGYLIRPCDGGGSIIHIVDHLN 348
                            9*********************************************999999888889****************************** PP

                            --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                  START 172 lkgrlphwllrslvksglaegaktwvatlqrqc 204
                            l++++++++lr+l++s+ + ++k++ a+l++ +
  Cse_sc008209.1_g020.1 349 LEAWSVPEVLRPLYESSKVVAQKMTIAALRYIR 381
                            ****************************99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 848 aa     Download sequence    
MAMVAQHHRE TTTSSSNSSM KQHDSNNNSH HQLDNGKYVR YTAEQVDALE RVYAECPKPS  60
SLRRQQLIRD CPILSNIEPK QIKVWFQNRR CREKQRKEAS RLQTVNRKLS AMNKLLMEEN  120
DRLQKQVSQL VYENGYMRQQ LTASTVTDAS CESVVTTPQH SLRDANNPAG LLAIAEETLA  180
EFLSKATGTA VDWVQMPGMK PGPDSVGIFA ISQSCSGVAA RACGLVSLEP TKIVEILKDR  240
TSWYRDCRSL EVLTMLPAGN GGTIELVYTQ VYAPTTLAPA RDFWTLRYTT SLDNGSLVVC  300
ERSLSGSGGG PNAASATQFV RGEMLPSGYL IRPCDGGGSI IHIVDHLNLE AWSVPEVLRP  360
LYESSKVVAQ KMTIAALRYI RQIAQESSGE VVYGLGRQPA VLRTLSQRLS KGFNDAINGF  420
NDDGWSLMNC DGAEDVIVAI NSTKNLTTLN LGGVLCAKAS MLFQNVPPAV LVRFLREHRS  480
EWADFNVDAY SAASVKANPY GFSGMRPTRF TGSQIIMPLG QTIEHEEMLE VIRLEGHALG  540
QEDPFVSRDI HLLQLCSGID ENTVGACSEL IFAPIDEMFP DDAPLIPSGF RIIPLDPKPV  600
KFMFTGDPKD AHRTLDLTSS LEVGSSTNQG SSDALSCPNT RSVLTIAFQF PFENNLADSV  660
ATMARQYVRS VINSVQRVAM AISPSGLSPS VSPKMSPGSP EALTLAQWIC QSYTYHLGTD  720
LLTSGSVVGD SLLKDLWQHQ DAILCCSLKS LPVFIFANQA GLDMLETTLV ALQDITLDKM  780
FDDDGRKALF PEFAKIMQQG FAYLPGGICM STMGRHITYE QAIAWKVLAG DETTVHCLAF  840
SFVNWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein