PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc008123.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 360aa MW: 41667.6 Da PI: 9.8086

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc008123.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	27.6	9.5e-09	1	44	2	46
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekk 46 +Y +YA+++GF +rks++k+ r+g ++++ +vC++eg++++ + Cse_sc008123.1_g030.1 1 MYTKYASDAGFGIRKSTQKRL-RDGFVKEKFLVCNREGYPKKIHL 44 6*************99998.9999***********998655 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MYTKYASDAG FGIRKSTQKR LRDGFVKEKF LVCNREGYPK KIHLNTLVPR KGDKQIVSRI 60 YDDIDFKNKL HKIVWNMYIG LEEFEIRWNQ LMVEVDLVNH KWLLKMYRIR SSWIPAFFVM 120 SLQWKNRDTN KIDSFPVLLK LLPIEVHAVR VYTRKLLVLA QKEIIAGSWL CSIKSKTCDE 180 GCDVSVISEE EPDPDTFPKV VNEESTLENI EEEVKLYQKD IEEYKVHIFF LFFLWFITNK 240 MVQLLAVVSS LFAMGFYVVT YFVYSRIVRW LDLIPPNLRR KKARYGQKNE EIKRLDIEAS 300 QIKGGREESI EQSKKQKKGC GICGLTDHNR CTYPKKKKVA TRGGGAGGSG GGGAAAAIEV

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MYTKYASDAG FGIRKSTQKR LRDGFVKEKF LVCNREGYPK KIHLNTLVPR KGDKQIVSRI  60
YDDIDFKNKL HKIVWNMYIG LEEFEIRWNQ LMVEVDLVNH KWLLKMYRIR SSWIPAFFVM  120
SLQWKNRDTN KIDSFPVLLK LLPIEVHAVR VYTRKLLVLA QKEIIAGSWL CSIKSKTCDE  180
GCDVSVISEE EPDPDTFPKV VNEESTLENI EEEVKLYQKD IEEYKVHIFF LFFLWFITNK  240
MVQLLAVVSS LFAMGFYVVT YFVYSRIVRW LDLIPPNLRR KKARYGQKNE EIKRLDIEAS  300
QIKGGREESI EQSKKQKKGC GICGLTDHNR CTYPKKKKVA TRGGGAGGSG GGGAAAAIEV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	279	318	RRKKARYGQKNEEIKRLDIEASQIKGGREESIEQSKKQKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	1e-06	FAR1 family protein