PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc007685.1_g040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | LBD | ||||||||
Protein Properties | Length: 234aa MW: 26752.2 Da PI: 6.6154 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 116.8 | 1.4e-36 | 10 | 108 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqql 87 aCaaC+++rr+C++dC+lapyfpa+qpk f+nvh+l+G+ n++k+l+++ ++e++e+am+s+ ye+++r+ Pv+G++g+i +l+q+l Cse_sc007685.1_g040.1 10 ACAACRFQRRRCSSDCPLAPYFPANQPKVFQNVHRLYGVGNMMKILNQIkDDEQKEEAMKSIKYESHIRQMYPVHGCHGTIVQLHQNL 97 7************************************************555669********************************* PP DUF260 88 eqlkaelallk 98 ++ el++++ Cse_sc007685.1_g040.1 98 VEATRELQSVN 108 ****9999876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence |
MTVKGGSRPA CAACRFQRRR CSSDCPLAPY FPANQPKVFQ NVHRLYGVGN MMKILNQIKD 60 DEQKEEAMKS IKYESHIRQM YPVHGCHGTI VQLHQNLVEA TRELQSVNMM LDAYKKKSKL 120 EREACYINNV DGQVVGGSSD WGTASMMNVG NDLGFFYDGL GDHNANEFKR RVTALQPSDW 180 DDEKKTINID SAKYKPRVDE FQFCNVEQGD GSPDYTEIMC RSFVDDHQDY ELKI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 1e-31 | LBD family protein |