PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc007243.1_g030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | LBD | ||||||||
Protein Properties | Length: 198aa MW: 21770.8 Da PI: 7.2616 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 120.1 | 1.2e-37 | 13 | 114 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C aCk+lrrkC+k+Cv+apyf ++q + +fa+vhk+FGasn +kll ++p+++r da+ sl+yeA r+rdPvyG+v i++lqqq Cse_sc007243.1_g030.1 13 PCGACKFLRRKCVKSCVFAPYFDSNQvgTTHFAAVHKVFGASNASKLLLRVPPHRRLDAVVSLCYEALSRVRDPVYGCVTNIFTLQQQ 100 7*********************9999767*********************************************************** PP DUF260 87 leqlkaelallkee 100 + +++aela+++++ Cse_sc007243.1_g030.1 101 VVNMEAELAYIRSR 114 *********98875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence |
MSNNNSNNGG VGPCGACKFL RRKCVKSCVF APYFDSNQVG TTHFAAVHKV FGASNASKLL 60 LRVPPHRRLD AVVSLCYEAL SRVRDPVYGC VTNIFTLQQQ VVNMEAELAY IRSRISMLQC 120 LPQLDLSRNS PELMSSSSVF SANSEPTTIE QTSLVAPRCP NNYTITSQEL EDCDLELLAQ 180 EFLAQYVHGV KDSPPSCS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00210.1 | 1e-60 | LBD family protein |