PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc006944.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 415aa MW: 47055.1 Da PI: 6.8474

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc006944.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.2	5.9e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ eEd+ll d+++ +G g+W+ + + g+ R++k+c++rw +yl Cse_sc006944.1_g010.1 14 RGAWSNEEDKLLTDYIQTHGEGQWRNLPTKAGLLRCGKSCRLRWMNYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	56.1	8.2e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eEd+l+++++ +G++ W+ Ia ++ gRt++++k++w+++l Cse_sc006944.1_g010.1 67 RGSFTPEEDDLIIQLHSVHGNR-WSFIATELK-GRTDNEIKNHWNSHL 112 89******************.****9.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MGRAPCCSKV GLHRGAWSNE EDKLLTDYIQ THGEGQWRNL PTKAGLLRCG KSCRLRWMNY 60 LRPGIKRGSF TPEEDDLIIQ LHSVHGNRWS FIATELKGRT DNEIKNHWNS HLKRKAANSS 120 GDQEDESQTN KKPKKKRRNT NSKSTKVKPV NVPEIIVPQE IVPQPASSNT SLSSSQSASF 180 TLRKTDSFDS VMMSGSSSSS SVDQGVEADL LATDFSWPSW APMFEIDQGV GSMNGPDDHD 240 LPFEICDLLM SNVDESEMLD KLYSEYLNLI EDGQQVWNIG DGRSVNVLND FWVNDHRSLG 300 PKLNNSNVDQ MKTWSALPSL MTRLTFGVLC GKRESLVILE SCPTKWEIFM MILWGLWTRR 360 NKQSSWPIDW YGGNVEAIAK LVLSYYHKEN QREIISGTSE VHNMGVWLRL DVERA

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MGRAPCCSKV GLHRGAWSNE EDKLLTDYIQ THGEGQWRNL PTKAGLLRCG KSCRLRWMNY  60
LRPGIKRGSF TPEEDDLIIQ LHSVHGNRWS FIATELKGRT DNEIKNHWNS HLKRKAANSS  120
GDQEDESQTN KKPKKKRRNT NSKSTKVKPV NVPEIIVPQE IVPQPASSNT SLSSSQSASF  180
TLRKTDSFDS VMMSGSSSSS SVDQGVEADL LATDFSWPSW APMFEIDQGV GSMNGPDDHD  240
LPFEICDLLM SNVDESEMLD KLYSEYLNLI EDGQQVWNIG DGRSVNVLND FWVNDHRSLG  300
PKLNNSNVDQ MKTWSALPSL MTRLTFGVLC GKRESLVILE SCPTKWEIFM MILWGLWTRR  360
NKQSSWPIDW YGGNVEAIAK LVLSYYHKEN QREIISGTSE VHNMGVWLRL DVERA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	138	KKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	2e-56	MYB family protein