PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc006695.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family HD-ZIP
Protein Properties Length: 299aa    MW: 33985.1 Da    PI: 4.4707
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc006695.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.4e-1977131357
                            --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
               Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                            k+++++++q++ Le+ Fe ++++  +++ +LAk lgL+ rq+ +WFqNrRa++k+
  Cse_sc006695.1_g020.1  77 KKRRLKADQVQFLEKSFETDNKLEPDRKIQLAKDLGLQPRQIAIWFQNRRARWKN 131
                            566899***********************************************95 PP
2HD-ZIP_I/II121.54.1e-3976166191
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                            ekkrrl+++qv++LE+sFe+++kLep+rK +la++Lglqprq+a+WFqnrRAR+k+kqlEkdy++L+++y++lk++ e++  e+e+L+
  Cse_sc006695.1_g020.1  76 EKKRRLKADQVQFLEKSFETDNKLEPDRKIQLAKDLGLQPRQIAIWFQNRRARWKNKQLEKDYDVLQESYNELKANYENILLEKEKLK 163
                            69************************************************************************************** PP

            HD-ZIP_I/II  89 eel 91 
                            +++
  Cse_sc006695.1_g020.1 164 SQV 166
                            998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MSARGFLYGG DSSGGGGGGS GFNSLFVPGS SHSFAGSRSM VSFEDKRNGS NGSFFRTVDQ  60
EDNGDDEYDE YLQHPEKKRR LKADQVQFLE KSFETDNKLE PDRKIQLAKD LGLQPRQIAI  120
WFQNRRARWK NKQLEKDYDV LQESYNELKA NYENILLEKE KLKSQVLDLS DKLILQETEK  180
GTSDSSSTKS PSEALQQEQV ADCVNVQDVA SDSSSPKCVD RVQSFLERGD SSYLFEQDQS  240
DGSIDEEDNL EKIFVTPLTG YLLPKIENCD YPDHYLGLLP SHDHDHDHDQ DRSFGFWSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17782KKRRLK
2125133RRARWKNKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.17e-45HD-ZIP family protein