PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc005763.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

AP2

Protein Properties

Length: 397aa MW: 44685.8 Da PI: 9.5218

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc005763.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.3	1.6e-17	77	127	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ +++g+ Cse_sc005763.1_g030.1 77 SQYRGVTFYRRTGRWESHIWD------SgKQVYLGGFDTAHAAARAYDQAAIRFRGH 127 78*****************......44***********************997 PP
2	AP2	40.9	5e-13	169	219	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f ++ eAa+a+++a+ k +g Cse_sc005763.1_g030.1 169 SKYRGVTLHK-CGRWEARMGQlH---G-KKYIYLGLFESELEAARAYDKAAIKCNG 219 89******.7**44433...4.6******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MILDLTLNLN SNDNVKPNTR KDDDRSLESV MTTKQFFPLD NGLRNDTLHD MHGVHEGEFV 60 LKQKMKKGRR GPRSRSSQYR GVTFYRRTGR WESHIWDSGK QVYLGGFDTA HAAARAYDQA 120 AIRFRGHDAD INFNINDYHE GLKQLKNLTK EEFVHVIRRQ STGLSRGSSK YRGVTLHKCG 180 RWEARMGQLH GKKYIYLGLF ESELEAARAY DKAAIKCNGR EAITNFEASS YEGAPTPSTK 240 SGANNIEYMD LNLGIAPPSF LNDTSRSMHQ INHILDDAYE AGRTTIDPTT SLALRTQIPL 300 VRPSDQGSAT YCCFPVYQET KLQKSKEVNS SLNWARQVHD PYSGANPASS FSAAASSGFG 360 NSMISYSSSG AAHHQPYYRT SALAHQHYNL PMYYSRS

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MILDLTLNLN SNDNVKPNTR KDDDRSLESV MTTKQFFPLD NGLRNDTLHD MHGVHEGEFV  60
LKQKMKKGRR GPRSRSSQYR GVTFYRRTGR WESHIWDSGK QVYLGGFDTA HAAARAYDQA  120
AIRFRGHDAD INFNINDYHE GLKQLKNLTK EEFVHVIRRQ STGLSRGSSK YRGVTLHKCG  180
RWEARMGQLH GKKYIYLGLF ESELEAARAY DKAAIKCNGR EAITNFEASS YEGAPTPSTK  240
SGANNIEYMD LNLGIAPPSF LNDTSRSMHQ INHILDDAYE AGRTTIDPTT SLALRTQIPL  300
VRPSDQGSAT YCCFPVYQET KLQKSKEVNS SLNWARQVHD PYSGANPASS FSAAASSGFG  360
NSMISYSSSG AAHHQPYYRT SALAHQHYNL PMYYSRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	9e-84	AP2 family protein