PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cse_sc005660.1_g020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
|
||||||||
Family | SRS | ||||||||
Protein Properties | Length: 334aa MW: 35821.1 Da PI: 7.3262 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 215.3 | 1.4e-66 | 114 | 273 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsst 89 sg++sCqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrerqq l+ +++ ++s+ a ++skr+r + + q+ Cse_sc005660.1_g020.1 114 SGGVSCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQYLSGGQHDPNRSRrAVSNSKRTRLVQDHDQNPNLVN 201 7899**************************************************9999988877745566677776533333332222 PP DUF702 90 klssa.......eskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++++ +s++ le+ ++P+ev ++a frcvrvss+d+ ++++aYq+av+igGh+fkGiLydqG+e Cse_sc005660.1_g020.1 202 QIATTgggaiayNSSSGLEVGNFPSEVTTPASFRCVRVSSIDETDDQFAYQAAVNIGGHLFKGILYDQGPEG 273 3222201111114555566666***********************************************985 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 334 aa Download sequence |
MAGFFSLGST NNNTSTNPSN PSSNSNPNTD PSSWFLYSTT RPSNTTHENP PTTTKDFELW 60 HQPQPPHDHL NLLAPPPSTT MGDGSRLINF SDESTWGSAA FVMMGHGGGA SGSSGGVSCQ 120 DCGNQAKKDC PHMRCRTCCK SRGFQCQTHV KSTWVPAAKR RERQQYLSGG QHDPNRSRRA 180 VSNSKRTRLV QDHDQNPNLV NQIATTGGGA IAYNSSSGLE VGNFPSEVTT PASFRCVRVS 240 SIDETDDQFA YQAAVNIGGH LFKGILYDQG PEGQYMGGET SSGGSAGIPQ LNLTTTSPGN 300 STAAANFIGH SLYPTLGGND YMTSTQFFHQ ISRD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75520.1 | 7e-63 | SRS family protein |