PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc004593.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Trihelix

Protein Properties

Length: 422aa MW: 47297.6 Da PI: 10.047

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc004593.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	44.4	4.3e-14	78	165	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 +W++ + +Li+a e+ +l+rg+lk+++W+ev++ + ++ ++ +qCk++++ ++k+yk +k+ + + st+++fd+ Cse_sc004593.1_g040.1 78 CWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVssrtDFMKVPKTDIQCKNRIDTVKKKYKLEKAKIAAG--GGPSTWKFFDR 163 7***********************************75444456677889**************99997..67779**** PP trihelix 85 le 86 le Cse_sc004593.1_g040.1 164 LE 165 98 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MEDDDDIRSN RSTGSGSRSG SPPSSRRITV TVASTPPPQQ NTLTLALPTP QPRLLAISGG 60 GGGSGGGSGG GGGGREDCWS EGATGVLIDA WGERYLELSR GNLKQKHWKE VADIVSSRTD 120 FMKVPKTDIQ CKNRIDTVKK KYKLEKAKIA AGGGPSTWKF FDRLEELIGP NVASKTGFST 180 PPLRNVNNVP VGIPVGVRSA PPVVQSLRLK QQQERQQQMV MQQQQQQHQQ MIMRLQQQQH 240 QKQQQLQQEQ LLQQRKRLRP PPAYSDSESE QDQDQDPDSP ESDPYEHKRA RLSASFSAKQ 300 KQQEADGNGR GSKDKNWGES VKELTKAIVK FAETYEQAES LKLQQMVEMQ KQSMKFAKEL 360 ELQRMQFFMK TQMELSQLKQ SRRTVGNSNN NHTNNHMHSN NHHIGNHNTI NDNNNHSDDS 420 NN

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MEDDDDIRSN RSTGSGSRSG SPPSSRRITV TVASTPPPQQ NTLTLALPTP QPRLLAISGG  60
GGGSGGGSGG GGGGREDCWS EGATGVLIDA WGERYLELSR GNLKQKHWKE VADIVSSRTD  120
FMKVPKTDIQ CKNRIDTVKK KYKLEKAKIA AGGGPSTWKF FDRLEELIGP NVASKTGFST  180
PPLRNVNNVP VGIPVGVRSA PPVVQSLRLK QQQERQQQMV MQQQQQQHQQ MIMRLQQQQH  240
QKQQQLQQEQ LLQQRKRLRP PPAYSDSESE QDQDQDPDSP ESDPYEHKRA RLSASFSAKQ  300
KQQEADGNGR GSKDKNWGES VKELTKAIVK FAETYEQAES LKLQQMVEMQ KQSMKFAKEL  360
ELQRMQFFMK TQMELSQLKQ SRRTVGNSNN NHTNNHMHSN NHHIGNHNTI NDNNNHSDDS  420
NN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	6e-45	Trihelix family protein