PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cse_sc004578.1_g030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 165aa MW: 19292.7 Da PI: 4.4705 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 38.3 | 3.7e-12 | 71 | 118 | 2 | 47 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllk 47 CaaC+++r++C++d lapyfp++q p +++nvhkl + v + l+ Cse_sc004578.1_g030.1 71 CAACRYKRQRCPPDSSLAPYFPDDQnkPDQTQNVHKLNELAIVNQRLA 118 **********************9775579*******987777766665 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 165 aa Download sequence |
MFVLKTRLED VIKQVREAAR ELVYVKELLV ELKVAYGVQN QNEIINDHDE FDFEYLDNQS 60 SLRKDPIKPV CAACRYKRQR CPPDSSLAPY FPDDQNKPDQ TQNVHKLNEL AIVNQRLAFY 120 KPAESGVQNQ NEIINDEEFC MKDLDDLRAA FYLDDILDHD DQIGR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G47870.1 | 1e-09 | LBD family protein |