PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc004259.1_g030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | LBD | ||||||||
Protein Properties | Length: 230aa MW: 25720.9 Da PI: 8.676 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 111.8 | 4.7e-35 | 37 | 132 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 aCa+C+++r+kC+++Cvlap fpae++++f++vhk+FG+snv+kl+k+l++e+ ++a++sl++eA++r++dPv+G +g ++++ +l+ Cse_sc004259.1_g030.1 37 ACASCRHQRKKCTEKCVLAPFFPAEKTQDFQAVHKVFGVSNVTKLVKDLSREDGKKAVDSLIWEANCRIKDPVNGPLGEFQRVCDELR 124 7*************************************************************************************** PP DUF260 89 qlkaelal 96 + +a++++ Cse_sc004259.1_g030.1 125 RYQANIHH 132 ***99875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence |
MQNNHNGSTN NTIRVLEAAP SPSPPPATAA NGGGVPACAS CRHQRKKCTE KCVLAPFFPA 60 EKTQDFQAVH KVFGVSNVTK LVKDLSREDG KKAVDSLIWE ANCRIKDPVN GPLGEFQRVC 120 DELRRYQANI HHDNIRQVHI AQNGVLYNKS SLQPRSIGSW NGDHNNVINN GTPMLEYFHS 180 NGIGGCIDNP RMFPYGSLQN IEKRKPEREQ QGSLIHPQPQ MMNDFTQNYY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 8e-39 | LBD family protein |