PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc004001.1_g070.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 459aa MW: 52469.5 Da PI: 7.443

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc004001.1_g070.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00039	11	33	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k++++ +L H+r+H Cse_sc004001.1_g070.1 11 FVCKLCDKRCPSGKSLGGHMRSH 33 89********************9 PP
2	zf-C2H2	11.4	0.001	103	124	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cgk F + L H+ H Cse_sc004001.1_g070.1 103 VCKQCGKGFQSLKALCGHMAFH 124 7******************988 PP
3	zf-C2H2	11.2	0.0011	401	423	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++F++ L H r+H Cse_sc004001.1_g070.1 401 HECPICFRMFKSGQALGGHKRSH 423 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence
MDVVDHDEIR FVCKLCDKRC PSGKSLGGHM RSHVFAAANA NGNTNANLVE SDDKYEPMKK 60 VSTLIINGNE NSTYGLRENP KKSWKSVGLG SSNSTLAFQN EQVCKQCGKG FQSLKALCGH 120 MAFHSDKDRG LKNYDYSWTS EKLDYEDKFV EDTHSDTEEN EMQDKICVTR SKTKRYKKII 180 IKPPSYCLTN ASTSNNNSNY NYGSSSVSEI DEFDQEDVAM WLIKLSKDSS NWGGVNSVAE 240 SSESDSVDLE TKLSRKEWNM VKNETESVLC ENSNGIKKVE SDISVDELLK NGDQHKNKSK 300 EVIGFNYRDL SYEEKQEIRR NLFREFGYDE SLKKRIRDED DYSYKKRNKY ECMNCNKVFS 360 SFQGLGGHRP CHRKNIAEGE FARNQKAKFE KKMKSKKNKG HECPICFRMF KSGQALGGHK 420 RSHFLNSSGD RYRYMAAMED EGPAYTDMID LNLPAPEED

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence

MDVVDHDEIR FVCKLCDKRC PSGKSLGGHM RSHVFAAANA NGNTNANLVE SDDKYEPMKK  60
VSTLIINGNE NSTYGLRENP KKSWKSVGLG SSNSTLAFQN EQVCKQCGKG FQSLKALCGH  120
MAFHSDKDRG LKNYDYSWTS EKLDYEDKFV EDTHSDTEEN EMQDKICVTR SKTKRYKKII  180
IKPPSYCLTN ASTSNNNSNY NYGSSSVSEI DEFDQEDVAM WLIKLSKDSS NWGGVNSVAE  240
SSESDSVDLE TKLSRKEWNM VKNETESVLC ENSNGIKKVE SDISVDELLK NGDQHKNKSK  300
EVIGFNYRDL SYEEKQEIRR NLFREFGYDE SLKKRIRDED DYSYKKRNKY ECMNCNKVFS  360
SFQGLGGHRP CHRKNIAEGE FARNQKAKFE KKMKSKKNKG HECPICFRMF KSGQALGGHK  420
RSHFLNSSGD RYRYMAAMED EGPAYTDMID LNLPAPEED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	2e-44	C2H2 family protein