PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc003783.1_g030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 170aa MW: 19655.4 Da PI: 9.7437 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 32.8 | 1.2e-10 | 20 | 52 | 24 | 56 |
S--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 24 ypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ +++ + k++gL+ rqV +WFqNrRa++k Cse_sc003783.1_g030.1 20 KVEPDRKIQQPKEIGLQSRQVATWFQNRRARWK 52 55556666666899******************9 PP | |||||||
2 | HD-ZIP_I/II | 68.4 | 1.5e-22 | 17 | 66 | 20 | 69 |
HD-ZIP_I/II 20 eeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkra 69 ++k+ep+rK + +e+glq rqva WFqnrRAR+ktkqlEkdy+ L++ Cse_sc003783.1_g030.1 17 LDNKVEPDRKIQQPKEIGLQSRQVATWFQNRRARWKTKQLEKDYNDLQEI 66 578*******************************************9975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence |
MQLQGPTVSS RPYFMSLDNK VEPDRKIQQP KEIGLQSRQV ATWFQNRRAR WKTKQLEKDY 60 NDLQEILLIL WLQLTIIQTF TWGMVSGSIL DENQVRSIVD KITQEGELLK EENQQEEKVF 120 DQGFGNVGSL VAQLFNEGGR KVVASNRRLS YGSAVRSEDV KTKPEKQLIK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 47 | 55 | RRARWKTKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22430.1 | 2e-18 | HD-ZIP family protein |