PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc003573.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 472aa MW: 54275.8 Da PI: 8.4168

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc003573.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00043	176	198	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + L++H +H Cse_sc003573.1_g030.1 176 CShdGCGKTFIDAGALRKHAHVH 198 77789**************9887 PP
2	zf-C2H2	15.1	6.6e-05	203	227	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ +Cgk F ++s LkrH H Cse_sc003573.1_g030.1 203 YVCHyqNCGKKFLDSSKLKRHFLIH 227 9********************8877 PP
3	zf-C2H2	20.3	1.5e-06	233	257	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp Cgk Fs nL++H++tH Cse_sc003573.1_g030.1 233 FICPheGCGKAFSLDFNLRSHMKTH 257 78**********************9 PP
4	zf-C2H2	13.5	0.00022	263	287	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp Cgk++ + + L++Hi++H Cse_sc003573.1_g030.1 263 HICPyrECGKRYAHDYKLRKHIMSH 287 68**********************6 PP
5	zf-C2H2	14.6	9.9e-05	334	359	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y Cp Cgk + + + L+ H+++ H Cse_sc003573.1_g030.1 334 YACPykGCGKAYIHEYKLNLHLKReH 359 89*********************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence
MIFSFGQGGT RCSGNRPQVL RYEMGHRLRI KEGVSLSVRT RLNELPGSIK PGHTLADLHS 60 PISATEFNNN NNPYNKTPKF HSNQTHFVLM DHLHNHHNHP YQSLFERSNH TKSKPTPPPV 120 KWLKKWVPQD VVATGGKCYV MKWVTEAQYN AIKEDSKEVK APEPEPEPTT EVLFLCSHDG 180 CGKTFIDAGA LRKHAHVHGE RQYVCHYQNC GKKFLDSSKL KRHFLIHTGE RDFICPHEGC 240 GKAFSLDFNL RSHMKTHSQE NYHICPYREC GKRYAHDYKL RKHIMSHHGK QTNNNMMAEM 300 PPLKYVHVPP IEKPPPKLTK PTTTYASPSS NRPYACPYKG CGKAYIHEYK LNLHLKREHP 360 GHFPDENPKN VLQSEMDAGS DHDGYILNRG NTKSQKQFRP NPNVQLPPAK VMQHNKAPMS 420 GAKKQTWPAV HNVYDDEDSE ETEEDRDEGE GRWGYGDNRN HEDDDEETDY EN

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence

MIFSFGQGGT RCSGNRPQVL RYEMGHRLRI KEGVSLSVRT RLNELPGSIK PGHTLADLHS  60
PISATEFNNN NNPYNKTPKF HSNQTHFVLM DHLHNHHNHP YQSLFERSNH TKSKPTPPPV  120
KWLKKWVPQD VVATGGKCYV MKWVTEAQYN AIKEDSKEVK APEPEPEPTT EVLFLCSHDG  180
CGKTFIDAGA LRKHAHVHGE RQYVCHYQNC GKKFLDSSKL KRHFLIHTGE RDFICPHEGC  240
GKAFSLDFNL RSHMKTHSQE NYHICPYREC GKRYAHDYKL RKHIMSHHGK QTNNNMMAEM  300
PPLKYVHVPP IEKPPPKLTK PTTTYASPSS NRPYACPYKG CGKAYIHEYK LNLHLKREHP  360
GHFPDENPKN VLQSEMDAGS DHDGYILNRG NTKSQKQFRP NPNVQLPPAK VMQHNKAPMS  420
GAKKQTWPAV HNVYDDEDSE ETEEDRDEGE GRWGYGDNRN HEDDDEETDY EN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.1	1e-111	C2H2 family protein