PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc002587.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 494aa MW: 53259.6 Da PI: 6.7456

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc002587.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00045	50	71	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+k Fs+ L H+r+H Cse_sc002587.1_g020.1 50 VCSVCKKEFSSGKALGGHMRVH 71 6*******************99 PP
2	zf-C2H2	13.6	0.0002	133	152	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ CgksF++ +L H+r Cse_sc002587.1_g020.1 133 TCSQCGKSFPSMKSLFGHMR 152 6******************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence
MDKVTENCEK EDTLMMVGSS TTPMVIKLKI PKAEDVLAIA TPAGNEGKRV CSVCKKEFSS 60 GKALGGHMRV HVMYHKNGGD MVNKPFKSSK LKRIGDDQDL SGGGGSVNGD EGLKVLINKP 120 YYLSSVNDEG VPTCSQCGKS FPSMKSLFGH MRCHPDRVWR GIMPPANVDL ARGKSQVVSG 180 KSSSLSCNSN VVDNGVGNDG GHGGEHVVDL SKYLKGWSVT ERRGRRSLKM DDSDEDDEDF 240 LEAVEDLMSL ANAHRSSVIE GSNSNANSPP SIDKGKAVMV GDNESKEVKM ELGDNESDSR 300 NSDEQLVVTY KCNKLSKKRK RMKLMNELEL ESGSDECKFK CTTCNKCFSS HQALGGHRSS 360 HNKAAAKIIS DAFESENVAK EAEFAGDVIS ISNGTVSHVH QCKICDKVFP TGQALGGHKR 420 CHWTGFSEAQ AHVQAQTISS HITSTGEAAS TQTESGRIVL DFDLNEVPAI MMEDANANVN 480 GNGYASSSYN SNMG

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence

MDKVTENCEK EDTLMMVGSS TTPMVIKLKI PKAEDVLAIA TPAGNEGKRV CSVCKKEFSS  60
GKALGGHMRV HVMYHKNGGD MVNKPFKSSK LKRIGDDQDL SGGGGSVNGD EGLKVLINKP  120
YYLSSVNDEG VPTCSQCGKS FPSMKSLFGH MRCHPDRVWR GIMPPANVDL ARGKSQVVSG  180
KSSSLSCNSN VVDNGVGNDG GHGGEHVVDL SKYLKGWSVT ERRGRRSLKM DDSDEDDEDF  240
LEAVEDLMSL ANAHRSSVIE GSNSNANSPP SIDKGKAVMV GDNESKEVKM ELGDNESDSR  300
NSDEQLVVTY KCNKLSKKRK RMKLMNELEL ESGSDECKFK CTTCNKCFSS HQALGGHRSS  360
HNKAAAKIIS DAFESENVAK EAEFAGDVIS ISNGTVSHVH QCKICDKVFP TGQALGGHKR  420
CHWTGFSEAQ AHVQAQTISS HITSTGEAAS TQTESGRIVL DFDLNEVPAI MMEDANANVN  480
GNGYASSSYN SNMG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	317	324	KKRKRMKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26940.1	5e-18	C2H2 family protein