PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc002347.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 664aa MW: 74900.9 Da PI: 7.607

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc002347.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	77	98	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C + F ++ n++rHi++H Cse_sc002347.1_g030.1 77 KCDKCAREFCSPVNYRRHIKVH 98 7*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 664 aa Download sequence
MPVTKLLGAN TPDAMNSEEG NDSLDTFFRQ AVGKQPLFSF SRTEDSPTQW IQLLHSFDQP 60 DLTTWPLLAP MKPQMQKCDK CAREFCSPVN YRRHIKVHRR SKKYHKALLL EPQKYRDFLG 120 AFWDKLAYDE AQDIMSLDDV NLEEVPGSSI VKEIADYLRK PNYLSLTQVY WKAGSALLNI 180 IQGRPPMLPV SSKELFSVLD DASERTFLCA GTAESLQKFV FNGEAGKILS ELRNLFACAS 240 FLVEQKLVKA WLADKDAEAL RCQKLLVEEE EAAQRRQADL IERKRRRKIR QKEQRARDHS 300 NRMKADLNTA IDISESIPSS ETSSPQTSPE VNPLTPDEYA VEPLNPIQFS SNEEAIDIEA 360 QQKLQGNGSH HFNARWQVQK SQRGGRNSPY NNQNGNVIKW EQTHKHREQR VHSGKIWTKK 420 PKSGNVGEEI VKSRVNNDAI NQTQTTASTN CQLMIGSISV TVRTSTGQHQ VNSQAEVQAD 480 RNTEVKTKSV QNGANRSNAK FWRPRHDARG QLTDISNSQT VEQDTTSERG TEQTVSTESH 540 QPACNLNGND YLVTNDSNLK AEDVDNQDHY PFSIDAAKAF LSQRWKEAIA GEHVELVLTS 600 APELPGQLDC QESDAQGGVV GNPNSQLAKV VEIDSPVTAN VKPKFRTWPD KNMKIKYIPK 660 HRVA

Sequence ? help Back to Top

Protein Sequence Length: 664 aa Download sequence

MPVTKLLGAN TPDAMNSEEG NDSLDTFFRQ AVGKQPLFSF SRTEDSPTQW IQLLHSFDQP  60
DLTTWPLLAP MKPQMQKCDK CAREFCSPVN YRRHIKVHRR SKKYHKALLL EPQKYRDFLG  120
AFWDKLAYDE AQDIMSLDDV NLEEVPGSSI VKEIADYLRK PNYLSLTQVY WKAGSALLNI  180
IQGRPPMLPV SSKELFSVLD DASERTFLCA GTAESLQKFV FNGEAGKILS ELRNLFACAS  240
FLVEQKLVKA WLADKDAEAL RCQKLLVEEE EAAQRRQADL IERKRRRKIR QKEQRARDHS  300
NRMKADLNTA IDISESIPSS ETSSPQTSPE VNPLTPDEYA VEPLNPIQFS SNEEAIDIEA  360
QQKLQGNGSH HFNARWQVQK SQRGGRNSPY NNQNGNVIKW EQTHKHREQR VHSGKIWTKK  420
PKSGNVGEEI VKSRVNNDAI NQTQTTASTN CQLMIGSISV TVRTSTGQHQ VNSQAEVQAD  480
RNTEVKTKSV QNGANRSNAK FWRPRHDARG QLTDISNSQT VEQDTTSERG TEQTVSTESH  540
QPACNLNGND YLVTNDSNLK AEDVDNQDHY PFSIDAAKAF LSQRWKEAIA GEHVELVLTS  600
APELPGQLDC QESDAQGGVV GNPNSQLAKV VEIDSPVTAN VKPKFRTWPD KNMKIKYIPK  660
HRVA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	283	287	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-121	C2H2 family protein