PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc002099.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

LBD

Protein Properties

Length: 359aa MW: 40241.2 Da PI: 6.1198

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc002099.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139.2	1.4e-43	8	108	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv k+l++l+ ++reda++sl+yeAear+rdPvyG+vg+i+ lq++l+ Cse_sc002099.1_g030.1 8 PCAACKFLRRKCTQECVFAPYFPPDQPAKFANVHKVFGASNVAKILNELSASHREDAVNSLAYEAEARLRDPVYGCVGLISVLQHRLK 95 7************************************************************************************* PP DUF260 89 qlkaelallkeel 101 q++++l+++k+el Cse_sc002099.1_g030.1 96 QVQVDLHSAKQEL 108 ******99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MSSSSNSPCA ACKFLRRKCT QECVFAPYFP PDQPAKFANV HKVFGASNVA KILNELSASH 60 REDAVNSLAY EAEARLRDPV YGCVGLISVL QHRLKQVQVD LHSAKQELAT YIGPSAMMPN 120 LTQAFMQQYA NMQPMLGQMG GIGPVGTMGP GTPSNMQPIL GLQGPRDAQQ QQQLYEAQQQ 180 QLVDAAREQE MFRNFEQQQL QQLQQQQQSQ HHQQIDLMRY NRGFDVTGPS GQQVNPSGFA 240 HLTGPSNMAP SLALGAGSYD NAMYQIQHEP QPQEDHSEPH LQQFIPQQLL VQQQVQQPQP 300 EPQPQPQPQM QQQEHNGDGS EEGRSAAVQL VRIQRYKVNG EDQFDQWMSS IIEIKLIMR

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MSSSSNSPCA ACKFLRRKCT QECVFAPYFP PDQPAKFANV HKVFGASNVA KILNELSASH  60
REDAVNSLAY EAEARLRDPV YGCVGLISVL QHRLKQVQVD LHSAKQELAT YIGPSAMMPN  120
LTQAFMQQYA NMQPMLGQMG GIGPVGTMGP GTPSNMQPIL GLQGPRDAQQ QQQLYEAQQQ  180
QLVDAAREQE MFRNFEQQQL QQLQQQQQSQ HHQQIDLMRY NRGFDVTGPS GQQVNPSGFA  240
HLTGPSNMAP SLALGAGSYD NAMYQIQHEP QPQEDHSEPH LQQFIPQQLL VQQQVQQPQP  300
EPQPQPQPQM QQQEHNGDGS EEGRSAAVQL VRIQRYKVNG EDQFDQWMSS IIEIKLIMR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	3e-70	LBD family protein