PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc001998.1_g130.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

WOX

Protein Properties

Length: 344aa MW: 40278.8 Da PI: 7.3912

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc001998.1_g130.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69.8	3.4e-22	85	144	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Leel+++ +r+psaee+++++++l +++ ++V++WFqN++a+e++ Cse_sc001998.1_g130.1 85 SRWNPTPEQLQTLEELYRRgTRTPSAEEIQHITAQLrrfgKIEGKNVFYWFQNHKARERQ 144 7***************99************************************97 PP
2	Wus_type_Homeobox	114.5	5.2e-37	84	146	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ++ Leely++G+rtP++eeiq+ita+L+++Gkie+kNVfyWFQN+kaRerqk+ Cse_sc001998.1_g130.1 84 SSRWNPTPEQLQTLEELYRRGTRTPSAEEIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKR 146 79***********************************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MWMMGYNETH EDHHLNMNMV ESYTNNGTRK LRPLAPKPPP PSCATSSSNR FPSAHLDHHL 60 LPINHHLAEH NKREFHSQQM VVVSSRWNPT PEQLQTLEEL YRRGTRTPSA EEIQHITAQL 120 RRFGKIEGKN VFYWFQNHKA RERQKRRRQL DKPTNDMHQP PFFTTDNINT IHLDQSVPRK 180 DSGFEETKNW AIRTFSEKSV LREKQEYRMT NVAGDHHEAW EQQYQEQEQD NEDGNDDDLL 240 LIQRRRKSNP TRNATWTHMM QSLSCSSTAP SITNNNHITL INNNSIKTSS SIVISPHDDV 300 DSYQTLQLFP VNNHSMEQPD KCFIPVSDVG LSPRQFIEFL PLKN

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MWMMGYNETH EDHHLNMNMV ESYTNNGTRK LRPLAPKPPP PSCATSSSNR FPSAHLDHHL  60
LPINHHLAEH NKREFHSQQM VVVSSRWNPT PEQLQTLEEL YRRGTRTPSA EEIQHITAQL  120
RRFGKIEGKN VFYWFQNHKA RERQKRRRQL DKPTNDMHQP PFFTTDNINT IHLDQSVPRK  180
DSGFEETKNW AIRTFSEKSV LREKQEYRMT NVAGDHHEAW EQQYQEQEQD NEDGNDDDLL  240
LIQRRRKSNP TRNATWTHMM QSLSCSSTAP SITNNNHITL INNNSIKTSS SIVISPHDDV  300
DSYQTLQLFP VNNHSMEQPD KCFIPVSDVG LSPRQFIEFL PLKN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	243	248	QRRRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	6e-39	WOX family protein