PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc001936.1_g050.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family FAR1
Protein Properties Length: 469aa    MW: 55618 Da    PI: 9.5324
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc001936.1_g050.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.61.8e-2279174290
                   FAR1   2 fYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.....dgkwevtkle 82 
                            fY++YAk  GFs+rk + +++  +++ge ++r+f C ++gk+e +  + +k++r+r++tr++C a +++k+++      g+w+vt+++
  Cse_sc001936.1_g050.1  79 FYQKYAKINGFSIRKGRFENKkgENKGERKRRDFFCHRKGKPEAKVVDYSKKQRNRVTTRCECMAIMHIKLRRmsdifPGEWQVTRFV 166
                            9**************987766568999*********************9*********************99876666689******* PP

                   FAR1  83 leHnHela 90 
                            ++HnH+l 
  Cse_sc001936.1_g050.1 167 SKHNHDLL 174
                            *****996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    
MNGIDCVAED HGKEFACGGV CSWCRSHGKS VMNERFPFEL NEVPMDEVVF EEEGQIEKEN  60
VDEPFVGQYF LSEEKALVFY QKYAKINGFS IRKGRFENKK GENKGERKRR DFFCHRKGKP  120
EAKVVDYSKK QRNRVTTRCE CMAIMHIKLR RMSDIFPGEW QVTRFVSKHN HDLLSTHEDR  180
FLPSYRSITT DDEKRILLLK EGGLSIRQIM RVMKLEKNLR HGELNFLTKD VYNFLAKYHK  240
KSPKTILTDQ DPWMTQAIAK EMPFTKHAFC IWHITSKFSG WFTSILRGEY SSWCSEFYEL  300
YKLDTVEEFE HKWPLVIEKY NLYENKHVVG LYKIKEFWVP AYLRDFFFGG MTTTGRTKSI  360
NAFIKRFISS RTCLSQFIKQ VDLVIEDVEQ KQMHNTMLVK YGGSCLRSLS PLEEQGRRLF  420
TSFAFKKFQE EFGKAIQYSV KEEKQSFFEA KHHKRSRLHK VNWDEKVAK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106111ERKRRD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.14e-48FAR1 family protein