PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc001525.1_g010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 224aa MW: 25399.9 Da PI: 6.537 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 31.2 | 2.8e-10 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 ie + r+ t+ kR++g++ K + +LC++e++ ii ++ Cse_sc001525.1_g010.1 10 YIEQDGARKATYNKRKKGLMTKLDQITTLCGVEACAIINGP 50 5899999*******************************886 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence |
MPKRKGKNEY IEQDGARKAT YNKRKKGLMT KLDQITTLCG VEACAIINGP YKPGFEVWPN 60 DEGVLSVLNK FSSMSEMDRN KHKENKTRYL EHRLKKVAEQ IKKQMALNRG LEMDILMSDC 120 LSGKVSIADD LNLQNKQAIS SLADQNLLEI NERFELFKNG TPADAPPPPP PPPQPLKDVE 180 CYVPVMENQG TSKESETSWY PTDWLGDYNW DLMQWDGASS SKTT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 6e-30 | M-type_MADS family protein |