PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc001298.1_g050.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

SBP

Protein Properties

Length: 1344aa MW: 151900 Da PI: 7.2525

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc001298.1_g050.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	101.1	8.7e-32	70	142	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gCe+d+ +yh+rh+vC ++++a++v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k+ Cse_sc001298.1_g050.1 70 TCQVPGCEVDI----RYHKRHRVCLACANASNVVIDGIHKRYCQQCAKFHVLPDFDEGKRSCRRKLERHNNRRRRKS 142 6*******9....6********************************************************986 PP
2	SBP	117.1	9.1e-37	733	809	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv+gCe+d+se+k yh+rh+vC ++++a++v+++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k++ Cse_sc001298.1_g050.1 733 CQVPGCEVDISELKGYHKRHRVCLACANASNVVIDGIHKRYCQQCAKFHVLSDFDEGKRSCRRKLERHNNRRRRKSS 809 *************************************************************************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1344 aa Download sequence
MDDPSSSTWD WNHLLDFDID DHLPLPTDDD LHASSSNGNV RKRDAQLAAE VEDANNNKKK 60 TTLKRNTKKT CQVPGCEVDI RYHKRHRVCL ACANASNVVI DGIHKRYCQQ CAKFHVLPDF 120 DEGKRSCRRK LERHNNRRRR KSLDPKGSKP QLADYNEGYD EAGKGAKSTS SEAAREESFL 180 AGEEHSTIQG STRVQNIRGD SIPSLGVSGE TQIDHAKEKG TQTPSYGDDK TDFSSTCPTG 240 RISFKLYDWN PAEFPRGLRH QIFQWLGSMP VELEGYIRPG CTILTIFIAM PRSVIKIEAG 300 EKAPKLHYVQ PACFEAGKPM NFLACGSNLH QPRLRFLVSF AGKYMKNEVR VSPLHTQREA 360 SITNSDHQSL SICVPYTELN VFGPGFIEVE NESGISNFIP ILVADEEVCS EIKIMQKKYC 420 SRLYARDSES TSTTKSCEAA VNKFSELLVD VAWLLKQPFV EDMECAMMSS QLQRFSFVLN 480 FLIEYESTIV LRRVLDLVKM KMNKNSGIIE ADSEFQGTVN YATKVLNQRL ERKSNLGLLP 540 RDQDMVQADS MQIPTAGHKS EHVALLNGDC ATSVRPYNEP PEKPFNRMFT YNAIRLIMSR 600 PLILAGMFEF QLLWLSRRII IISTSPHSPA LTMDDDPSSS KWDWNQLLDF NIDDHLPMED 660 QDINNLHASV SNSNVKKHDP RMACSNCLAA GQIPCACPVL DAQLAADQEE EEENKKQKSK 720 TKMTFTSTIM NKCQVPGCEV DISELKGYHK RHRVCLACAN ASNVVIDGIH KRYCQQCAKF 780 HVLSDFDEGK RSCRRKLERH NNRRRRKSSD PKGSVFQSAD CNDKAGKGEG HNSIQGSTHA 840 QNINRDSITS LAGEANTDEG RENGDNTSNT DFSSMCPTGR ISFKLYDWNP AEFPHISMVG 900 QHACGVGRIY ASWMHNYYHF HCNAEVMWVK LNEDPVVCIY DLLALPKNML LRRDTFYINL 960 NSMIFSVMKG GRSVIKIEAG EKAPKLHYVQ PTCFEAGKPI NLLACGSNLL QPRLRFLVSF 1020 AGKYMKNEVR VSPLHTQSEA SITNSDHHFL SICVPYTELD VFGPGFIEVE NESGISNFIP 1080 ILVADEEVCS EIKTMQMKFR SRLYARDSDE VVVNKFSELL VDIAWLLKQP FVEDMECAMM 1140 SSQLQRFSFV LSFLIEYEST IVLRKVLDLV KMKMNKNGGI VEADSELQGT VNYATEVLNQ 1200 LLERKSNLDL LPRDQDMVRA ESKQIPAAGH KSEHVALLNG DCATSVRPYN EPPEKPFQRD 1260 RDQSNRSLQR GERRGNQPTV VYGTFRPKSL YFMSYLLFFF LLLDLVCGLV LGPFLAQHHN 1320 FEKTGTLPSP QRGPPLDIRV NQQA

Sequence ? help Back to Top

Protein Sequence Length: 1344 aa Download sequence

MDDPSSSTWD WNHLLDFDID DHLPLPTDDD LHASSSNGNV RKRDAQLAAE VEDANNNKKK  60
TTLKRNTKKT CQVPGCEVDI RYHKRHRVCL ACANASNVVI DGIHKRYCQQ CAKFHVLPDF  120
DEGKRSCRRK LERHNNRRRR KSLDPKGSKP QLADYNEGYD EAGKGAKSTS SEAAREESFL  180
AGEEHSTIQG STRVQNIRGD SIPSLGVSGE TQIDHAKEKG TQTPSYGDDK TDFSSTCPTG  240
RISFKLYDWN PAEFPRGLRH QIFQWLGSMP VELEGYIRPG CTILTIFIAM PRSVIKIEAG  300
EKAPKLHYVQ PACFEAGKPM NFLACGSNLH QPRLRFLVSF AGKYMKNEVR VSPLHTQREA  360
SITNSDHQSL SICVPYTELN VFGPGFIEVE NESGISNFIP ILVADEEVCS EIKIMQKKYC  420
SRLYARDSES TSTTKSCEAA VNKFSELLVD VAWLLKQPFV EDMECAMMSS QLQRFSFVLN  480
FLIEYESTIV LRRVLDLVKM KMNKNSGIIE ADSEFQGTVN YATKVLNQRL ERKSNLGLLP  540
RDQDMVQADS MQIPTAGHKS EHVALLNGDC ATSVRPYNEP PEKPFNRMFT YNAIRLIMSR  600
PLILAGMFEF QLLWLSRRII IISTSPHSPA LTMDDDPSSS KWDWNQLLDF NIDDHLPMED  660
QDINNLHASV SNSNVKKHDP RMACSNCLAA GQIPCACPVL DAQLAADQEE EEENKKQKSK  720
TKMTFTSTIM NKCQVPGCEV DISELKGYHK RHRVCLACAN ASNVVIDGIH KRYCQQCAKF  780
HVLSDFDEGK RSCRRKLERH NNRRRRKSSD PKGSVFQSAD CNDKAGKGEG HNSIQGSTHA  840
QNINRDSITS LAGEANTDEG RENGDNTSNT DFSSMCPTGR ISFKLYDWNP AEFPHISMVG  900
QHACGVGRIY ASWMHNYYHF HCNAEVMWVK LNEDPVVCIY DLLALPKNML LRRDTFYINL  960
NSMIFSVMKG GRSVIKIEAG EKAPKLHYVQ PTCFEAGKPI NLLACGSNLL QPRLRFLVSF  1020
AGKYMKNEVR VSPLHTQSEA SITNSDHHFL SICVPYTELD VFGPGFIEVE NESGISNFIP  1080
ILVADEEVCS EIKTMQMKFR SRLYARDSDE VVVNKFSELL VDIAWLLKQP FVEDMECAMM  1140
SSQLQRFSFV LSFLIEYEST IVLRKVLDLV KMKMNKNGGI VEADSELQGT VNYATEVLNQ  1200
LLERKSNLDL LPRDQDMVRA ESKQIPAAGH KSEHVALLNG DCATSVRPYN EPPEKPFQRD  1260
RDQSNRSLQR GERRGNQPTV VYGTFRPKSL YFMSYLLFFF LLLDLVCGLV LGPFLAQHHN  1320
FEKTGTLPSP QRGPPLDIRV NQQA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	128	140	RRKLERHNNRRRR
2	794	806	RRKLERHNNRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.2	1e-119	SBP family protein