PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cse_sc001036.1_g060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 208aa MW: 23084.1 Da PI: 7.0593 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.5 | 1.1e-38 | 10 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p +r +a+ +++yeA+ar++dPvyG+v++i++lqqq+ Cse_sc001036.1_g060.1 10 PCGACKFLRRKCAADCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAYEAQARIKDPVYGCVAHIFALQQQV 97 7*************************99************************************************************ PP DUF260 88 eqlkaelallkee 100 ++l+++l ++k++ Cse_sc001036.1_g060.1 98 ACLQTQLMQIKAQ 110 *******998876 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 208 aa Download sequence |
MSTGAGSGSP CGACKFLRRK CAADCIFAPY FCSEQGPARF AAIHKVFGAS NVSKLLLHVP 60 VADRCEAVVT IAYEAQARIK DPVYGCVAHI FALQQQVACL QTQLMQIKAQ MAQGFFDSRN 120 IETQWPGSAV YQNYPTFTNI MNGNISPQSS LESIDHNNEG TSDQEKQSRD DVDHYHDISF 180 QQVNNNKKRP FPSDLGELQE LAVRMMRN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G42430.1 | 3e-77 | LBD family protein |