PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000526.1_g070.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Trihelix

Protein Properties

Length: 506aa MW: 56228.7 Da PI: 5.326

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000526.1_g070.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.1	1.1e-18	232	316	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 Wt++e+ Li+a++e++ ++++g lk+++Weev+ + ++ g+ ++++kqC++k+e+l+kry++++ ++r + + +f+ + Cse_sc000526.1_g070.1 232 WTHDETANLIQAYQEKWYSIKKGPLKAGQWEEVAVTVaARCGYdepTKTSKQCRHKMEKLRKRYRQERGKPRSR----ANAWDFFKMM 315 ********************************99965667755579*****************99997....4569**99 PP trihelix 86 e 86 + Cse_sc000526.1_g070.1 316 D 316 8 PP

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence
MASTPHELEQ HQQHQQHQQS EIGGSPPTVT SPVEEDQEFI DSNMPYSPSL NSVDCQLTEY 60 PVDQPPPPPP PPEEQVVEIP PSPPPSATEQ NHEIKEQPPS PPPSLHVDPP QNPNPNPNVE 120 SPIENPPPSP STAEAPPETP ISKPSSPSPL PPPEIDTNPK GESPVAQQVS SPPSETEDNN 180 NESLSLVEVE NNQKPSSRSP SPKSPHKELP LGVPLYNAVT NYIPSKPVIS PWTHDETANL 240 IQAYQEKWYS IKKGPLKAGQ WEEVAVTVAA RCGYDEPTKT SKQCRHKMEK LRKRYRQERG 300 KPRSRANAWD FFKMMDNLEK GPLPISSSPM EVVEYGKPSD VNGKKRKSDV VGGEFLVSKR 360 SARVRNINSN DRGNVNGGLV GTLPFSDGVS RIVKGLRTPV VHKPREYYQA SYGVQKKVEE 420 EEDDGGSDND GDEGVVTQLA AEIKGFAEKF VRMEKNKIEM IRDVERYRME MENKRMEMIR 480 ESQQMLVETV NRAFGGSNKT HSLSAK

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence

MASTPHELEQ HQQHQQHQQS EIGGSPPTVT SPVEEDQEFI DSNMPYSPSL NSVDCQLTEY  60
PVDQPPPPPP PPEEQVVEIP PSPPPSATEQ NHEIKEQPPS PPPSLHVDPP QNPNPNPNVE  120
SPIENPPPSP STAEAPPETP ISKPSSPSPL PPPEIDTNPK GESPVAQQVS SPPSETEDNN  180
NESLSLVEVE NNQKPSSRSP SPKSPHKELP LGVPLYNAVT NYIPSKPVIS PWTHDETANL  240
IQAYQEKWYS IKKGPLKAGQ WEEVAVTVAA RCGYDEPTKT SKQCRHKMEK LRKRYRQERG  300
KPRSRANAWD FFKMMDNLEK GPLPISSSPM EVVEYGKPSD VNGKKRKSDV VGGEFLVSKR  360
SARVRNINSN DRGNVNGGLV GTLPFSDGVS RIVKGLRTPV VHKPREYYQA SYGVQKKVEE  420
EEDDGGSDND GDEGVVTQLA AEIKGFAEKF VRMEKNKIEM IRDVERYRME MENKRMEMIR  480
ESQQMLVETV NRAFGGSNKT HSLSAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	1e-25	Trihelix family protein