PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc000504.1_g060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | MYB | ||||||||
Protein Properties | Length: 261aa MW: 29444.3 Da PI: 6.8587 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.1 | 5.7e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+++Ed+ll + ++ +G g+W++ +++ g+ R++k+c++rw +yl Cse_sc000504.1_g060.1 14 RGAWSADEDKLLTNHIQTYGEGQWRSLPSKAGLLRCGKSCRLRWVNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 39.6 | 1.2e-12 | 68 | 103 | 10 | 47 |
HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 e +++++ +G++ W+ Ia +++ gRt++++k++w+ + Cse_sc000504.1_g060.1 68 EAIIRLHSIHGNR-WSHIATELP-GRTDNEIKNYWNAH 103 7899*********.*********.***********976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence |
MGRTPCCSKV GLHRGAWSAD EDKLLTNHIQ TYGEGQWRSL PSKAGLLRCG KSCRLRWVNY 60 LRPEETSEAI IRLHSIHGNR WSHIATELPG RTDNEIKNYW NAHLKRTLLN PSYQLTKTKK 120 KPRKKRNLQD KKQEPTNSQQ KSTEVLKAVE PVPATSSSSG ASSSCTFDFI DEDFDLSWSN 180 LAPFLEVEST TSVMMDECFL MDGCDLVMSK DDENVMLEKL YYEYHDLLSY EGVDGYIIFQ 240 PTGLAQLATL ESLGALGGGR S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 1e-52 | MYB family protein |