PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc000504.1_g050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | MYB | ||||||||
Protein Properties | Length: 247aa MW: 28171.6 Da PI: 6.7728 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.9 | 1.5e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd+ll + ++ +G g+W++ +++ g+ R++k+c++rw +yl Cse_sc000504.1_g050.1 14 RGAWSAEEDKLLTNHIQTYGEGQWRSLPSKAGLLRCGKSCRLRWVNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.7 | 2e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T +E e +++++ +G++ W+ Ia +++ gRt++++k++w+ + Cse_sc000504.1_g050.1 67 RGNFTSDESEAIIRLHSIHGNR-WSHIATELP-GRTDNEIKNYWNAH 111 89********************.*********.***********976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence |
MGRTPCCSKV GLHRGAWSAE EDKLLTNHIQ TYGEGQWRSL PSKAGLLRCG KSCRLRWVNY 60 LRPGIKRGNF TSDESEAIIR LHSIHGNRWS HIATELPGRT DNEIKNYWNA HLKRTLQNPS 120 YQLTKTKKKP RKKRNLEDKK QEPTNSQQKS TEVLKAVEPV PATSSSSGAS SSCTFNFIDD 180 DFDLSWSDLT PFMEVESTSV MDDQGFECFL MDGCDLLMSK DDENVMLEKL YYEYQDLLSY 240 EGVDGVN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 5e-62 | MYB family protein |