PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000458.1_g100.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

M-type_MADS

Protein Properties

Length: 357aa MW: 40711 Da PI: 8.8523

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000458.1_g100.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	23.7	6.1e-08	15	54	5	44
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 +s+r+ t+ +R++ ++K + ++vLC+ae++++i t+ Cse_sc000458.1_g100.1 15 IESKRKATLKRRKEALIKSLNTICVLCGAEACMVICDRTN 54 5789******************************986665 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MTRPRRRVKL ARIVIESKRK ATLKRRKEAL IKSLNTICVL CGAEACMVIC DRTNNQGTNN 60 KMVWPSKEQA EAMMSSFMSL PQEQRKKQAV SHKMFLESLL AKKNKKLESL RTKNNQMEME 120 EILHNFSIDP TSIEPASGKL TRLFLYINDL IAKIEENENV TDEMVKYVKA KYGDTWLKED 180 EMFDDLCRYA KEAQVMKDVT DEMVKYVKAK YGDTWLKEDE MFDDLCRYAK EAQVMKGDDI 240 ADVILEYLWE KYGNKESQKG TNVKGNEVDV IIISDTSDDE CGNMSSKTTN SKGSISQASK 300 ASKASAPKVV LGLVAAVGCS GTNRNDWYVP PPKDLKSPPM NNKTPIKKFT CYFYLLM

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MTRPRRRVKL ARIVIESKRK ATLKRRKEAL IKSLNTICVL CGAEACMVIC DRTNNQGTNN  60
KMVWPSKEQA EAMMSSFMSL PQEQRKKQAV SHKMFLESLL AKKNKKLESL RTKNNQMEME  120
EILHNFSIDP TSIEPASGKL TRLFLYINDL IAKIEENENV TDEMVKYVKA KYGDTWLKED  180
EMFDDLCRYA KEAQVMKDVT DEMVKYVKAK YGDTWLKEDE MFDDLCRYAK EAQVMKGDDI  240
ADVILEYLWE KYGNKESQKG TNVKGNEVDV IIISDTSDDE CGNMSSKTTN SKGSISQASK  300
ASKASAPKVV LGLVAAVGCS GTNRNDWYVP PPKDLKSPPM NNKTPIKKFT CYFYLLM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	5	27	RRRVKLARIVIESKRKATLKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31630.1	2e-18	M-type_MADS family protein