PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc000233.1_g020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | LBD | ||||||||
Protein Properties | Length: 233aa MW: 27181 Da PI: 8.0798 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 119.5 | 1.9e-37 | 11 | 108 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 aCaaCk++r++C+++C+lap+f e+p f+nvhklFG++n+lk+l++++++++++am+s++yeA++r r P++G++ +i +lq q++ Cse_sc000233.1_g020.1 11 ACAACKYQRKRCTPQCALAPHFRPEHPTVFRNVHKLFGVRNILKILEQINPHHKNEAMRSIIYEANMRDRFPIQGCLTIICNLQYQIR 98 7*************************************************************************************** PP DUF260 89 qlkaelallk 98 q+++el ++ Cse_sc000233.1_g020.1 99 QAEEELYAVL 108 *****98765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence |
MTLKGATTTQ ACAACKYQRK RCTPQCALAP HFRPEHPTVF RNVHKLFGVR NILKILEQIN 60 PHHKNEAMRS IIYEANMRDR FPIQGCLTII CNLQYQIRQA EEELYAVLTQ LAFYKQQHER 120 QQVRSLIAFR DSLQLGIGVL QPENTSNTLL RNDATPPLPF SLYDNTNICG KPLWFQETDN 180 TAHALQKSLV LKSSNIKEVM HDHQDEIYPF FDNIDQDRQT YLDIKEDGWP FHR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 3e-41 | LBD family protein |