PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62044546-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 229aa MW: 25747.1 Da PI: 10.2252 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.1 | 1.5e-15 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i n+s r+ t+ kR+ g+lKK EL +LCd++++ i++s+ AUR62044546-RA 10 FIANDSARKATYKKRKRGLLKKMDELTTLCDVKACAILYSP 50 899************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence |
MTRKKVKLAF IANDSARKAT YKKRKRGLLK KMDELTTLCD VKACAILYSP YETRPVVWPA 60 PSGAKDVIAS FKRLPEMEKV KKMVSQEEFL RQRVAKAHEQ LKKQQKDNRE KDMTHVMYQC 120 LAGAFVIVFH GSILWNFKFV VCSYYSMYGH VEKLAEEILK GAASIEGVEA KTLADGFLFG 180 FPTRFGMMAA QFKAFMDATG GLWRTQQLAG KPAGIFYSTG SQGGGQETT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 25 | RKKVKLAFIANDSARKATYKKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-49 | M-type_MADS family protein |