PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AUR62043402-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 243aa MW: 25987.1 Da PI: 7.0825 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24.4 | 5e-08 | 4 | 40 | 25 | 57 |
--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 25 psaeereeLAkkl....gLterqVkvWFqNrRakekk 57 p +ee ++ k l + +++V++WFqNrR + ++ AUR62043402-RA 4 PPKEETVRIRKLLekfgAVGDANVFYWFQNRRSRSRR 40 555666666666666678899*************997 PP | |||||||
2 | Wus_type_Homeobox | 62.5 | 8.8e-21 | 1 | 42 | 24 | 65 |
Wus_type_Homeobox 24 lrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++P+kee+ ri++ Le++G+++d+NVfyWFQNr++R+r++q AUR62043402-RA 1 MVNPPKEETVRIRKLLEKFGAVGDANVFYWFQNRRSRSRRRQ 42 78**************************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 243 aa Download sequence |
MVNPPKEETV RIRKLLEKFG AVGDANVFYW FQNRRSRSRR RQRQLQASLA ASVTPVGSQT 60 PPPPPVSMNL GLLGGGGGSS SSLYDFGHHH HHHHQNSIIS TCTTQASSSV TCFSPSNTST 120 SSTNFGDCGG VVDDAFGNYS GQMGLINSNH HLDCPSSSPN LEFQSGIITV FLNGVATQVP 180 DGALDMKAMF GEEVILVHSS GVPVPFNEYG ISLQSLQHGE SYFLVCASSL LLLRCCPNAY 240 VN* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G03660.1 | 4e-26 | WOX family protein |