PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62042853-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

SBP

Protein Properties

Length: 717aa MW: 80133.1 Da PI: 6.7226

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62042853-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	37.9	4.6e-12	129	163	2	36
-SSTT-----TT--HHHHHTT--HHHHT-S-EEET CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvs 36 Cqv+gCe+d+ e+k yhrrh+vC v+++a++v+++ AUR62042853-RA 129 CQVPGCEVDIRELKGYHRRHRVCLVCANATSVVIE 163 *******************************9986 PP
2	SBP	28.6	3.8e-09	162	188	52	78
TTT--SS--S-STTTT-------S--- CS SBP 52 lsefDeekrsCrrrLakhnerrrkkqa 78 +++fDe+krsCrr+L++hn+rrr+k+a AUR62042853-RA 162 IEDFDEGKRSCRRKLERHNNRRRRKSA 188 789********************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 717 aa Download sequence
MDLPPLTGGG EESGAPFEWS DLFDFTIDDQ LLLNLDVSDH PKEQPPVLLP PVTNAEDNGK 60 TVAVNGGESG SSDRVRKRDP RMICKNFLAG RVPCACPELD ALMAEEEEEE AGPGKKRPRM 120 GRTPGVAKCQ VPGCEVDIRE LKGYHRRHRV CLVCANATSV VIEDFDEGKR SCRRKLERHN 180 NRRRRKSADY RGTVEKEPQG DVQTEDVFSD GEAGKENAWS GGQIEKEDSK DKTLSNLCSA 240 LESQNIESDS NLTFTPVDKV VDNLEREYSP PSDTKSAYTS ACPTGRISFK LYDWNPAEFP 300 RRLRHQIFQW LASMPVELEG YIRPGCTILT VFVSMPQYMW VKLFEDPVSY VQNSVGHGGI 360 LSGRGAALVY LNDLRFRVMR EGASVMKVKV AVRAPRLHYI YPPCFEAGKP MDFVACGSNL 420 LQPKFRSLVS FAGKYLAHDY YVAFPRGKED KPAIDYDYQL CRIYVPHTEP SYFGPAFVEV 480 ENECGLSNFI PILIGDAHVC SEIKLIHQKY DCSNCRKKSQ CMPSGSSYGT CEVSCSRQAA 540 LSEFMLDVAW LLKQPCSEKL HCILTSSQIQ RYNCLINAHN KELILKQGGE CVSNVYTCLG 600 SFSRDDMLSV DHTACQVTKL RAEMNCTFLE HSDSQGEGES ISLINREVAM NVNDSRDWPK 660 NSCHSVISKK FTSTRPFIYA IAVVAVCFGV CAVVLHPYKV TKFAVTIRRC VFDNSS*

Sequence ? help Back to Top

Protein Sequence Length: 717 aa Download sequence

MDLPPLTGGG EESGAPFEWS DLFDFTIDDQ LLLNLDVSDH PKEQPPVLLP PVTNAEDNGK  60
TVAVNGGESG SSDRVRKRDP RMICKNFLAG RVPCACPELD ALMAEEEEEE AGPGKKRPRM  120
GRTPGVAKCQ VPGCEVDIRE LKGYHRRHRV CLVCANATSV VIEDFDEGKR SCRRKLERHN  180
NRRRRKSADY RGTVEKEPQG DVQTEDVFSD GEAGKENAWS GGQIEKEDSK DKTLSNLCSA  240
LESQNIESDS NLTFTPVDKV VDNLEREYSP PSDTKSAYTS ACPTGRISFK LYDWNPAEFP  300
RRLRHQIFQW LASMPVELEG YIRPGCTILT VFVSMPQYMW VKLFEDPVSY VQNSVGHGGI  360
LSGRGAALVY LNDLRFRVMR EGASVMKVKV AVRAPRLHYI YPPCFEAGKP MDFVACGSNL  420
LQPKFRSLVS FAGKYLAHDY YVAFPRGKED KPAIDYDYQL CRIYVPHTEP SYFGPAFVEV  480
ENECGLSNFI PILIGDAHVC SEIKLIHQKY DCSNCRKKSQ CMPSGSSYGT CEVSCSRQAA  540
LSEFMLDVAW LLKQPCSEKL HCILTSSQIQ RYNCLINAHN KELILKQGGE CVSNVYTCLG  600
SFSRDDMLSV DHTACQVTKL RAEMNCTFLE HSDSQGEGES ISLINREVAM NVNDSRDWPK  660
NSCHSVISKK FTSTRPFIYA IAVVAVCFGV CAVVLHPYKV TKFAVTIRRC VFDNSS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	185	RRKLERHNNRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.2	1e-173	SBP family protein