PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62042187-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family HD-ZIP
Protein Properties Length: 849aa    MW: 92299.4 Da    PI: 6.3673
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62042187-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.25.9e-183996457
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++t+eq+++Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  AUR62042187-RA 39 YVRYTAEQVDALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 96
                    5789****************************************************97 PP
2START158.64.8e-501773812204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+ +sg a+ra+g+v  +++   +e+l+d++ W +++++ e+      g  g+++l+
  AUR62042187-RA 177 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISHRCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRSLEVFTMFPAGngGTIELI 270
                     7899******************************************************.7777777777***********999999999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksg 188
                     +++ +a+++l+p Rdf+++Ry+ +l+ g+ v++++S++   +++  ++++Ra +lpSg+li+p+++g+s +++v+h +l++++++++lr+l++s+
  AUR62042187-RA 271 YTQIYAPTTLAPaRDFWTLRYTTTLENGSVVVCERSLSGSGPNTAAPQFIRADMLPSGYLIRPCDGGGSIIHIVDHLNLEAWSVPEVLRPLYQSS 365
                     ******************************************999************************************************** PP

                     HHHHHHHHHHHTXXXX CS
           START 189 laegaktwvatlqrqc 204
                      + ++k++ a+l++ +
  AUR62042187-RA 366 KVVAQKMTIAALRYIR 381
                     ***********99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    
MAMVAHRESS SGSGGSSGMS KHMAAAAAAA ASSADAGKYV RYTAEQVDAL ERVYAECPKP  60
SSLRRQQLIR ECPILSNIEP KQIKVWFQNR RCREKQRKES SRLQTVNRKL SAMNKLLMEE  120
NDRLQKQVSQ LVCENGFMRQ QLHTAPTATT DGSCESVVTT PQHNLRDTNN PAGLLSIAEE  180
TLAEFLSKAT GTAVDWVQMP GMKPGPDSVG IFAISHRCSG VAARACGLVS LEPTKIAEIL  240
KDRPSWFRDC RSLEVFTMFP AGNGGTIELI YTQIYAPTTL APARDFWTLR YTTTLENGSV  300
VVCERSLSGS GPNTAAPQFI RADMLPSGYL IRPCDGGGSI IHIVDHLNLE AWSVPEVLRP  360
LYQSSKVVAQ KMTIAALRYI RQIAQETSGE VVYSLGRQPA VLRTFSQRLS RGFNDAINGF  420
PDDGWTLLTC DGAEDVIIAC NSAKTFMATL NAASSLPMVG GVLCAKASML LQNVPPAVLV  480
RFLREHRSEW ADFSVDAYSA AALKSNAYAF PGMRATRFTG SQIIMPLGHT IENEEMLEVI  540
RLEGHSLTPE DAYISRDIHL LQICSGIDEN AVGACSELVF APIDEMFPDD APLLPSGFRI  600
IPLDSKPETA TNRTLDLTSS LEVGPSTNNG AADATSSGST RSVLTIAFQF PFEISLQENV  660
ATMARQYVRT VISSVQRVAM AISPSGANPT VGPKLSPGSP EALTLAHWIC QSYSYHMGTE  720
LLRTSSAGDD TVLKHLWHHQ DAIVCCSLKS LPVLIFANQA GLDMLETTLV ALQDVTLDKI  780
FDESGRKSLC SDFPKIMQLG YACLPGGVCM STMGRNVSYE QAIAWKVFAA DETTVHCLAF  840
TFVNWSFV*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein