PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62041424-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

FAR1

Protein Properties

Length: 360aa MW: 41036.2 Da PI: 9.2523

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62041424-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	43.4	1.1e-13	65	149	1	79
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......tekerrtraetrtgCkaklkvkkekdgkwevt 79 +fY++YA+ +GF vr ++k+++ ++e++ + ++C+k+g++++ ++k + + r+r+ +r+gC a++k ++ +++++ AUR62041424-RA 65 EFYKQYARFCGFVVRLGTEKRTQATDEVYLKYLYCNKQGFTKDGETKgrvakkeGKPKARKRTINRVGCSATIKEEEG-IEQYRIV 149 6****************************************999999998877788889********9987666.5555554 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MEEESEEGSC SNTSTTTNVA ENLPSLKGPS VCYTPRGTKE FIPCCPPELK PTIGMPFDSL 60 LKGFEFYKQY ARFCGFVVRL GTEKRTQATD EVYLKYLYCN KQGFTKDGET KGRVAKKEGK 120 PKARKRTINR VGCSATIKEE EGIEQYRIVD NTRKKSYHFT YVLCSNDASC SCRMFESVGI 180 LCRYILFVMK GKFLFEIPRQ YVLHRWTKEA MKKPIFGLNN NLLDGAQKDK KQKLVGDLWY 240 RFFSCVSLCE EKVECLESLL SKLISFENEM KDLESEGPVD KREAKNKHIE LFVGSNDIVV 300 DILPPNKSSN KGSGSGKRKK SDKEIAIEES QKKDRLCRTC GQRTNHDSRN CPQKKKKPN*

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MEEESEEGSC SNTSTTTNVA ENLPSLKGPS VCYTPRGTKE FIPCCPPELK PTIGMPFDSL  60
LKGFEFYKQY ARFCGFVVRL GTEKRTQATD EVYLKYLYCN KQGFTKDGET KGRVAKKEGK  120
PKARKRTINR VGCSATIKEE EGIEQYRIVD NTRKKSYHFT YVLCSNDASC SCRMFESVGI  180
LCRYILFVMK GKFLFEIPRQ YVLHRWTKEA MKKPIFGLNN NLLDGAQKDK KQKLVGDLWY  240
RFFSCVSLCE EKVECLESLL SKLISFENEM KDLESEGPVD KREAKNKHIE LFVGSNDIVV  300
DILPPNKSSN KGSGSGKRKK SDKEIAIEES QKKDRLCRTC GQRTNHDSRN CPQKKKKPN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	317	357	KRKKSDKEIAIEESQKKDRLCRTCGQRTNHDSRNCPQKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19990.1	6e-12	FAR1 family protein