PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62039363-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB_related

Protein Properties

Length: 684aa MW: 74736.2 Da PI: 9.22

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62039363-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.7	2.2e-07	576	625	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ AUR62039363-RA 576 RRPFSVSEVEALVRAVEKLGTGRWRDVKLCAFenaKHRTYVDLKDKWKTL 625 678999*******************999999************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence
MVLLKRTLDH VVNGYRSPAI PRAPRSIRKR GFRQKTPENG GQVCAFELLA TVAGKLLEES 60 ECSSASSSAA VGFDQCRIDK DVVVKKEPLD VDKTLGGEHD DQGSSEGSVF FSGLQRDSFK 120 GKLEKVNEVT GMDASPFASS ACSEKVDSDS KLVTQKINSL FVKHSCKVDG SSPKCGESDD 180 INIENGLIRK LYTNGGASGV NATANKSSAP TNSEENVNLT LGRGANPNAS SLKEGNDVKI 240 NCKDNDEILS QCSKPNNIMK AFRSPACDED NKLLSSKYWK TAPKLKDYEP SNTDGGLKNN 300 DTSKRPSYEI DRFQRNTPFK KRRLFDRSSV VTYDGGISCE SVSNSPEKGL DDEKNASAGK 360 LLEGKGTPSS GLCRQKSCNS RNSQVRLSIK SFKVPELFIE VPESTTVGSL KRTVLEAVTT 420 ILGGGLRVGV LLQGKTVRDD NRTLLQSGIS QSDDMDTIGF MLEPNNPTQP SPLVCSQEPP 480 PPVPCDSPKF VNRSQVNPNG NSFAIKTPEK PFLTDSIKPS GSIKDLVSYP STELTDKTLS 540 KSKAIVPVPE ESMEALAVVP MNQRSKRSDI GQRRTRRPFS VSEVEALVRA VEKLGTGRWR 600 DVKLCAFENA KHRTYVDLKD KWKTLVHTAR ISPQQRRGEP VPQDLLDRVL AAQSYWSEHQ 660 AKQHGKQQQQ QGIIAKLTDS VRP*

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence

MVLLKRTLDH VVNGYRSPAI PRAPRSIRKR GFRQKTPENG GQVCAFELLA TVAGKLLEES  60
ECSSASSSAA VGFDQCRIDK DVVVKKEPLD VDKTLGGEHD DQGSSEGSVF FSGLQRDSFK  120
GKLEKVNEVT GMDASPFASS ACSEKVDSDS KLVTQKINSL FVKHSCKVDG SSPKCGESDD  180
INIENGLIRK LYTNGGASGV NATANKSSAP TNSEENVNLT LGRGANPNAS SLKEGNDVKI  240
NCKDNDEILS QCSKPNNIMK AFRSPACDED NKLLSSKYWK TAPKLKDYEP SNTDGGLKNN  300
DTSKRPSYEI DRFQRNTPFK KRRLFDRSSV VTYDGGISCE SVSNSPEKGL DDEKNASAGK  360
LLEGKGTPSS GLCRQKSCNS RNSQVRLSIK SFKVPELFIE VPESTTVGSL KRTVLEAVTT  420
ILGGGLRVGV LLQGKTVRDD NRTLLQSGIS QSDDMDTIGF MLEPNNPTQP SPLVCSQEPP  480
PPVPCDSPKF VNRSQVNPNG NSFAIKTPEK PFLTDSIKPS GSIKDLVSYP STELTDKTLS  540
KSKAIVPVPE ESMEALAVVP MNQRSKRSDI GQRRTRRPFS VSEVEALVRA VEKLGTGRWR  600
DVKLCAFENA KHRTYVDLKD KWKTLVHTAR ISPQQRRGEP VPQDLLDRVL AAQSYWSEHQ  660
AKQHGKQQQQ QGIIAKLTDS VRP*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-118	MYB_related family protein