PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62033228-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 803aa MW: 92485.1 Da PI: 9.0651

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62033228-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.4	1.1e-07	70	89	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G+rC++ H AUR62033228-RA 70 CPFHLKTGVCRFGARCSRVH 89 ******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 803 aa Download sequence
RCKLDEESKK ELANNENASE ANEDDDWEYI EEGPAEIIWK GNEIIVKKKK IRVPKKAPEI 60 LKENQDKAHC PFHLKTGVCR FGARCSRVHF YPDKACTILI KNMYNGPGLA WEQDEGLEHT 120 DEEVKQSFED FYEDVHTEFL KFGELVNFKV CKNGSSHLRG NVYVHYKSLE SAMLAYQSTN 180 GRYFAGKLSC SRGSACNFIH CFRNPGGDYE WADWDKPAPR YWLKKMAALF GYTSDDFTDE 240 VCLRYHSRRS RSRGLDIPHR KSLSDEDDGY KSRRGRHSPH RGDGRETSNL GKEMQKERTY 300 LDYRCFKHSE TDNVDVSEGI TDGHRSVVGI KKSSKKRKRE RVYHSRRSRS RGLDSPHRKS 360 WSDEDDGYKR RRGRYSPRRG DDRETSNLDR EMQEERRTCQ DSRFDVSEGS TDGQGYVAGT 420 KRSSQKRERE RLFTDQDNKS RKVDANSSKG EIAEGGVSDR YHEHKSRSSS RQNGVAESAR 480 ECPHNKVDKS DVGKSPYGEK NYDEFHRYKD KRVTAKKIEA ASLNNSHGDS QDNEEDGHHS 540 RSKEKTRMMK DEAESSSSAS QCSDDSRLVK VEKRQQKKRR KSSRFKDKTR AQKDVRKSSR 600 LQKQSGSTDT ESDGDDDRHH RHSRIHSRPM IYDVESSDGN KLGRSRSYCG TCNQTARSDF 660 MNPDVQGGIL CRSSDGDKLH DSSNRDSAPE RERKRPDEER MLQVYRSDEE ATAPGMVATS 720 LVHTSFKGTD NEAKGELEKA CRLAALKKLE EIRMKKDTQT FHRREPIESL KICTEENIHG 780 RVLEKANSSK VEVCEISIKR RI*

Sequence ? help Back to Top

Protein Sequence Length: 803 aa Download sequence

RCKLDEESKK ELANNENASE ANEDDDWEYI EEGPAEIIWK GNEIIVKKKK IRVPKKAPEI  60
LKENQDKAHC PFHLKTGVCR FGARCSRVHF YPDKACTILI KNMYNGPGLA WEQDEGLEHT  120
DEEVKQSFED FYEDVHTEFL KFGELVNFKV CKNGSSHLRG NVYVHYKSLE SAMLAYQSTN  180
GRYFAGKLSC SRGSACNFIH CFRNPGGDYE WADWDKPAPR YWLKKMAALF GYTSDDFTDE  240
VCLRYHSRRS RSRGLDIPHR KSLSDEDDGY KSRRGRHSPH RGDGRETSNL GKEMQKERTY  300
LDYRCFKHSE TDNVDVSEGI TDGHRSVVGI KKSSKKRKRE RVYHSRRSRS RGLDSPHRKS  360
WSDEDDGYKR RRGRYSPRRG DDRETSNLDR EMQEERRTCQ DSRFDVSEGS TDGQGYVAGT  420
KRSSQKRERE RLFTDQDNKS RKVDANSSKG EIAEGGVSDR YHEHKSRSSS RQNGVAESAR  480
ECPHNKVDKS DVGKSPYGEK NYDEFHRYKD KRVTAKKIEA ASLNNSHGDS QDNEEDGHHS  540
RSKEKTRMMK DEAESSSSAS QCSDDSRLVK VEKRQQKKRR KSSRFKDKTR AQKDVRKSSR  600
LQKQSGSTDT ESDGDDDRHH RHSRIHSRPM IYDVESSDGN KLGRSRSYCG TCNQTARSDF  660
MNPDVQGGIL CRSSDGDKLH DSSNRDSAPE RERKRPDEER MLQVYRSDEE ATAPGMVATS  720
LVHTSFKGTD NEAKGELEKA CRLAALKKLE EIRMKKDTQT FHRREPIESL KICTEENIHG  780
RVLEKANSSK VEVCEISIKR RI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	577	581	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	7e-98	C3H family protein