PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62031324-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

HRT-like

Protein Properties

Length: 423aa MW: 47491.2 Da PI: 10.0609

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62031324-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	58.9	8.2e-19	263	292	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCGvil+dG++C+++P kgRKRC eHKG+R AUR62031324-RA 263 ICGVILNDGTICSNSPFKGRKRCSEHKGRR 292 8****************************9 PP
2	HRT-like	57.7	1.9e-18	325	355	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGvil d s+C+++P +gRKRCeeHKGmR+ AUR62031324-RA 325 ICGVILLDSSPCTKSPSPGRKRCEEHKGMRV 355 8*****************************7 PP
3	HRT-like	54.6	1.9e-17	381	410	2	31
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGv+l+dG +C+rqPvkgRKRCe+HKGmR+ AUR62031324-RA 381 CGVNLGDGKCCERQPVKGRKRCEQHKGMRV 410 *****************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence
MGGEPQGLTT PSTTTPRLKR ENYRQTKHDT AFSKWKILIG PSDWVNYEAK KEGAERYRVA 60 NLPPICNPGL YEIGVAVCHS DSGRDVSKLD TEFIVVVYLG QADNVRSRLQ DYGRNGSHLI 120 NGFGLFKEIF SRGYPIVYRW APMKSKSDAE RTEAKLLERF DYAWNKAGNG ARRPNDVLTK 180 MEKISSRNIK IPKILKMLQS FREQKVGILI KAEKFSLGNK PGHDIYDKNF NLFDRVFKFS 240 RSQPRLVSTN PEANAEDTNK IHICGVILND GTICSNSPFK GRKRCSEHKG RRLTSASINS 300 KIMTKDSSTN NSQVENFVND EFSSICGVIL LDSSPCTKSP SPGRKRCEEH KGMRVNQITK 360 SLIFKSVIEN PLSDPDPADC CGVNLGDGKC CERQPVKGRK RCEQHKGMRV NAYVSKLSSR 420 VN*

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence

MGGEPQGLTT PSTTTPRLKR ENYRQTKHDT AFSKWKILIG PSDWVNYEAK KEGAERYRVA  60
NLPPICNPGL YEIGVAVCHS DSGRDVSKLD TEFIVVVYLG QADNVRSRLQ DYGRNGSHLI  120
NGFGLFKEIF SRGYPIVYRW APMKSKSDAE RTEAKLLERF DYAWNKAGNG ARRPNDVLTK  180
MEKISSRNIK IPKILKMLQS FREQKVGILI KAEKFSLGNK PGHDIYDKNF NLFDRVFKFS  240
RSQPRLVSTN PEANAEDTNK IHICGVILND GTICSNSPFK GRKRCSEHKG RRLTSASINS  300
KIMTKDSSTN NSQVENFVND EFSSICGVIL LDSSPCTKSP SPGRKRCEEH KGMRVNQITK  360
SLIFKSVIEN PLSDPDPADC CGVNLGDGKC CERQPVKGRK RCEQHKGMRV NAYVSKLSSR  420
VN*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	8e-98	HRT-like family protein