PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62030929-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 180aa MW: 20410.2 Da PI: 10.3011 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.8 | 5.9e-28 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ri+n++ rqvtfskRr g++KKA ELS+LCda+v +iifsstgklye++ AUR62030929-RA 10 RIDNTTSRQVTFSKRRSGLIKKARELSILCDAQVGLIIFSSTGKLYEFA 58 9***********************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence |
MGRGKLVIQR IDNTTSRQVT FSKRRSGLIK KARELSILCD AQVGLIIFSS TGKLYEFANT 60 NMRSVIERYH NTHDCVLQPT SADDLKDQLL ADEITDLKRN GGLTRQENIQ LHQKLHIVKQ 120 ENSDLRNKLN GTYKEHQAYQ RPHTSISVQS ERYVPVRLQL SQPQPLNIDA SARTTTKLG* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14210.1 | 4e-42 | MIKC_MADS family protein |