PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62030764-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

ERF

Protein Properties

Length: 331aa MW: 36634.6 Da PI: 4.7839

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62030764-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.4	3.6e-18	70	129	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.....ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +g+WvAeIr p++ g k kr +lg+f ta eAa+a+++a++ l+g AUR62030764-RA 70 CRYRGVRQRV-WGKWVAEIRKPCSseleiSGnKVKRLWLGTFSTAIEAAQAYDEAARVLYG 129 78****99.******7775665544445********************98887 PP

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence
MSFGTEDQVE RKKRRLNASI EVSETLAKWR SEKVLNDSRK AEFGTKKNQK PKGSRRGCMK 60 GKGGPENSSC RYRGVRQRVW GKWVAEIRKP CSSELEISGN KVKRLWLGTF STAIEAAQAY 120 DEAARVLYGA SATLNFPDSV SVSTSSSVCG SSSERNVNSV VRHYVDSLPE CDDDSEPNFK 180 ESHKKNMVKG AIKEGIDDLE GKVISNRKPC SIADVESAVQ EEQNEATSAR DWKEGLVKSM 240 EIVTLDQSSP DCDQRPSENL PSPDMLCGNW RQQEAGSLDL DDATGLINFN EDSIDFGDLT 300 NLINFEEAFF NFDDFADLSD LIGTQTPKNC *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	11	50	RKKRRLNASIEVSETLAKWRSEKVLNDSRKAEFGTKKNQK
2	12	51	RKKRRLNASIEVSETLAKWRSEKVLNDSRKAEFGTKKNQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40340.1	3e-29	ERF family protein