PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62030531-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

ERF

Protein Properties

Length: 330aa MW: 36561.7 Da PI: 6.182

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62030531-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.8	2.7e-18	70	129	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.....ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+WvAeIr p++ g k kr +lg+f ta eAa+a+++a++ l+g AUR62030531-RA 70 CSYRGVRQRV-WGKWVAEIRKPCSseleiSGnKVKRLWLGTFSTAIEAARAYDEAARVLYG 129 67****99.******7775665544445********************98887 PP

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence
MSFGNEDQVE RKKRRLNANI EVSKTLAKWR SEKVLNDSRK AEFGTKKNQK PKGSRRGCMK 60 GKGGPENSSC SYRGVRQRVW GKWVAEIRKP CSSELEISGN KVKRLWLGTF STAIEAARAY 120 DEAARVLYGA SAILNFPDSG SVSTGSSVFG SSEKNVDSAI RHYVNSLPKC GDESEPNFME 180 SHRKNMVKNA IQEGIHDLEG KVRSNRKPCN IADVENAVQE EQNGATSARG WKEGLVKSME 240 IVTRDQSCHD CDQRPSEELS SPDMLCGNWQ KQEAGSLDLD DATGLINFNE DSIDFGDLTN 300 LINFEEALFN FDDFADLSDL IGTQTPKNC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	11	50	RKKRRLNANIEVSKTLAKWRSEKVLNDSRKAEFGTKKNQK
2	12	51	RKKRRLNANIEVSKTLAKWRSEKVLNDSRKAEFGTKKNQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40340.1	2e-28	ERF family protein