PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62030249-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB_related

Protein Properties

Length: 612aa MW: 70433.9 Da PI: 8.1119

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62030249-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.1	4e-08	404	444	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE el ++ +++G++ Wkt ++g + + ++k+ w+ AUR62030249-RA 404 KWTPEEVELVKKFYEKHGPD-WKTLGDELG--KHRFHVKDVWRR 444 8***************88.******9..678889988886 PP

Sequence ? help Back to Top
Protein Sequence Length: 612 aa Download sequence
MSNEGDVSTS GKKKHKKRKN SEISDLGAEE GNVELADESR PKKKLKQKVL SDSGVDVDFG 60 ADMDKSLRKK KKKDVNGIDV DTLWDDNKSK GKMKKGKSGD RREASKVLES SGEAVNEENL 120 EVSRSKRSRK KKNDRDNVDH KENSGIELVK GDFKMKKKSN DNVGDASFVE KQAHNEVIAN 180 KKQKNVKDSL GDRYLSEDHL GNSHVNAHKS VEDSQLGGNR AVNLDKELEM NTHCASTNGR 240 QKFRDRGNKK RKEKSRGCYT EVDATDCMPE MNKAAEPSEL STHKKSKKVQ FSETVEVFPL 300 SDESIKEKKK MVEVGNEENN NVENGLVQGK RFSKEEDEMV RNAVYKYVED HQLGEEGVEM 360 VMNCRLHQEL KGCWKEIGES LPWRPYLAVY SRAHVLFERS EDRKWTPEEV ELVKKFYEKH 420 GPDWKTLGDE LGKHRFHVKD VWRRTRYPNL KKGTWSQEEY QNLFNLVNMD LSMKVFTEKR 480 SKHGMLRDNI AWDAVSDQLA TRSNSLCCMK WYDSLTSPMV AEGKWANSDD YRMLIALVDR 540 DDACEDDVDW DNLLEHRSGD ICRKRWNQMV RHIGEHGRKS FIEQVEILSQ RYCPNILEAR 600 ESYDNRPAVD A*

Sequence ? help Back to Top

Protein Sequence Length: 612 aa Download sequence

MSNEGDVSTS GKKKHKKRKN SEISDLGAEE GNVELADESR PKKKLKQKVL SDSGVDVDFG  60
ADMDKSLRKK KKKDVNGIDV DTLWDDNKSK GKMKKGKSGD RREASKVLES SGEAVNEENL  120
EVSRSKRSRK KKNDRDNVDH KENSGIELVK GDFKMKKKSN DNVGDASFVE KQAHNEVIAN  180
KKQKNVKDSL GDRYLSEDHL GNSHVNAHKS VEDSQLGGNR AVNLDKELEM NTHCASTNGR  240
QKFRDRGNKK RKEKSRGCYT EVDATDCMPE MNKAAEPSEL STHKKSKKVQ FSETVEVFPL  300
SDESIKEKKK MVEVGNEENN NVENGLVQGK RFSKEEDEMV RNAVYKYVED HQLGEEGVEM  360
VMNCRLHQEL KGCWKEIGES LPWRPYLAVY SRAHVLFERS EDRKWTPEEV ELVKKFYEKH  420
GPDWKTLGDE LGKHRFHVKD VWRRTRYPNL KKGTWSQEEY QNLFNLVNMD LSMKVFTEKR  480
SKHGMLRDNI AWDAVSDQLA TRSNSLCCMK WYDSLTSPMV AEGKWANSDD YRMLIALVDR  540
DDACEDDVDW DNLLEHRSGD ICRKRWNQMV RHIGEHGRKS FIEQVEILSQ RYCPNILEAR  600
ESYDNRPAVD A*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	13	46	KKHKKRKNSEISDLGAEEGNVELADESRPKKKLK
2	16	46	KKRKNSEISDLGAEEGNVELADESRPKKKLK
3	41	47	PKKKLKQ
4	68	98	KKRKNSEISDLGAEEGNVELADESRPKKKLK
5	68	74	RKKKKKD
6	69	99	KKRKNSEISDLGAEEGNVELADESRPKKKLK
7	70	100	KKRKNSEISDLGAEEGNVELADESRPKKKLK
8	129	159	KKRKNSEISDLGAEEGNVELADESRPKKKLK
9	249	282	KKHKKRKNSEISDLGAEEGNVELADESRPKKKLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41020.1	1e-124	MYB_related family protein