PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62029146-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 376aa MW: 42453.1 Da PI: 8.5918

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62029146-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.4	3.2e-07	218	240	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cg+ F+r nL+ H+r H AUR62029146-RA 218 HYCQVCGRGFKREANLRMHMRAH 240 68*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MIQGEALCFS NGDGAGGMHH GHPSNLYNDV VETSFNAGTE GIHHTQSVRS ILFSLSILKE 60 KIHKVDSFVS IFLTQENQYH AHSTINQLTS SMAFSSMANL IQEIVQTASL MMLNCERMAL 120 GPTHVQTGNT NNNINNSTSH VHVDQEQHTM QKANNNGLVQ FSVDEVIVNS TSQGFLDGIN 180 FNNHQAINRK TYQELDVSTE AYDLVEVDAA DLLAKYTHYC QVCGRGFKRE ANLRMHMRAH 240 GDKYKSSLMS DPLKKKNNEE NNTTKKPPRK YSCPQKGCRW NKNHVKFQPL KSMVCVRNHY 300 KRSHCPKMFV CNRCNTKEFS VLSDFKTHEK HCGDVKWYCS CGTSFSKKDK LMNHVALFVG 360 HTPLIYPLVM LSDSR*

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MIQGEALCFS NGDGAGGMHH GHPSNLYNDV VETSFNAGTE GIHHTQSVRS ILFSLSILKE  60
KIHKVDSFVS IFLTQENQYH AHSTINQLTS SMAFSSMANL IQEIVQTASL MMLNCERMAL  120
GPTHVQTGNT NNNINNSTSH VHVDQEQHTM QKANNNGLVQ FSVDEVIVNS TSQGFLDGIN  180
FNNHQAINRK TYQELDVSTE AYDLVEVDAA DLLAKYTHYC QVCGRGFKRE ANLRMHMRAH  240
GDKYKSSLMS DPLKKKNNEE NNTTKKPPRK YSCPQKGCRW NKNHVKFQPL KSMVCVRNHY  300
KRSHCPKMFV CNRCNTKEFS VLSDFKTHEK HCGDVKWYCS CGTSFSKKDK LMNHVALFVG  360
HTPLIYPLVM LSDSR*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22890.1	2e-95	C2H2 family protein