PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62027593-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB_related

Protein Properties

Length: 595aa MW: 68682.2 Da PI: 8.6238

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62027593-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.3	3.6e-08	387	427	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE el ++ +++G++ Wkt ++g + + ++k+ w+ AUR62027593-RA 387 KWTPEEVELVKKFYEKHGPD-WKTLGDELG--KHRFHVKDVWRR 427 8***************88.******9..677888888876 PP

Sequence ? help Back to Top
Protein Sequence Length: 595 aa Download sequence
MSNEGNVSTS GKKKHKKRKN SEISDLGAEE ANVELTDESR PNMKLKQKVL SDSGVDVDFG 60 ADMDKSLRKK KKKGVNGIDV DTLWDNNKSK GKMKKGKSGD RRGVSKVLES SGEIVNEETS 120 EVSRSKRSRK KKNDRDDVDH KENSDIELVK EEKQTHHEII TNKKQKNVKD NLGDVYLSEE 180 HLGNSHVNAH KSVEDSQLGG NRAVNLDEEL EKSTHCAPIS GSQKRKDRGS KKRKEKSRGC 240 YTKVDATDCM PEMNKAAEPS EFSNNHKKSK KVKFSETVEV FPLADESIKK KKKVVLDRNE 300 ENNSVENGLV QGKRFSKEED EMVRKAVYKY IEDHQLGDEG VEMVMNCRLH RELKGCWKEI 360 GESLPWRPYI AVYSRAHILF ERSEDRKWTP EEVELVKKFY EKHGPDWKTL GDELGKHRFH 420 VKDVWRRIRY PNLKKGAWSQ EEYQNLFNLV NMDLSMKVFT EKRSKHGMLR DNIAWEAVSD 480 QLTTRSNSLC CMKWYDSLTS PMVAEGKWAN SDDYRMLIAL VDRDDACEDD VDWDNLLEHR 540 SGDICRKRWN QMVRHIGEHG RKSFIEQVEI LSQRYCPNIL EARESYDNRP AVDA*

Sequence ? help Back to Top

Protein Sequence Length: 595 aa Download sequence

MSNEGNVSTS GKKKHKKRKN SEISDLGAEE ANVELTDESR PNMKLKQKVL SDSGVDVDFG  60
ADMDKSLRKK KKKGVNGIDV DTLWDNNKSK GKMKKGKSGD RRGVSKVLES SGEIVNEETS  120
EVSRSKRSRK KKNDRDDVDH KENSDIELVK EEKQTHHEII TNKKQKNVKD NLGDVYLSEE  180
HLGNSHVNAH KSVEDSQLGG NRAVNLDEEL EKSTHCAPIS GSQKRKDRGS KKRKEKSRGC  240
YTKVDATDCM PEMNKAAEPS EFSNNHKKSK KVKFSETVEV FPLADESIKK KKKVVLDRNE  300
ENNSVENGLV QGKRFSKEED EMVRKAVYKY IEDHQLGDEG VEMVMNCRLH RELKGCWKEI  360
GESLPWRPYI AVYSRAHILF ERSEDRKWTP EEVELVKKFY EKHGPDWKTL GDELGKHRFH  420
VKDVWRRIRY PNLKKGAWSQ EEYQNLFNLV NMDLSMKVFT EKRSKHGMLR DNIAWEAVSD  480
QLTTRSNSLC CMKWYDSLTS PMVAEGKWAN SDDYRMLIAL VDRDDACEDD VDWDNLLEHR  540
SGDICRKRWN QMVRHIGEHG RKSFIEQVEI LSQRYCPNIL EARESYDNRP AVDA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	16	46	KKRKNSEISDLGAEEANVELTDESRPNMKLK
2	68	98	KKRKNSEISDLGAEEANVELTDESRPNMKLK
3	69	99	KKRKNSEISDLGAEEANVELTDESRPNMKLK
4	70	100	KKRKNSEISDLGAEEANVELTDESRPNMKLK
5	126	166	KRSRKKKNDRDDVDHKENSDIELVKEEKQTHHEIITNKKQK
6	129	169	KRSRKKKNDRDDVDHKENSDIELVKEEKQTHHEIITNKKQK
7	231	271	KRSRKKKNDRDDVDHKENSDIELVKEEKQTHHEIITNKKQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41020.1	1e-124	MYB_related family protein