PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62027548-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family FAR1
Protein Properties Length: 248aa    MW: 27605.8 Da    PI: 9.8234
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62027548-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR136.31.8e-111481271
            FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkke 71
                     Yn+YA ++GFs+rk + ++  ++    +r +vCs+ g ++++k++   ++ ++   rt+C a ++   +
  AUR62027548-RA 14 LYNDYAFNIGFSIRKGNIRTVGKTSVWRSRGYVCSCAGLKNDSKRH--VRKFKKLDFRTNCGAFVEFIID 81
                    7*****************************************9998..788899999******9987655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MRKTVTSDDE AYNLYNDYAF NIGFSIRKGN IRTVGKTSVW RSRGYVCSCA GLKNDSKRHV  60
RKFKKLDFRT NCGAFVEFII DPEQLKVISV MKASGVRVTD SLSLLSKEVG GSPNLGCTRK  120
DIYNALNTEK ANRLDGSDCN QLIKYFAQRQ AKEVDFYYEF EALDDDGYPL TYSHPTTKDS  180
SLNVLPKQMN GQSSMGVQGA SKKRKVPAND AQTSSRENTY NSQGNGRQPS KKNNNTSQPS  240
SSSQFGY*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.13e-06FAR1 family protein