PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62027409-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

HRT-like

Protein Properties

Length: 415aa MW: 46785.4 Da PI: 9.717

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62027409-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	55.7	8e-18	262	291	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCGvi +dG++C+++P kgRKRC eHKG+R AUR62027409-RA 262 ICGVISNDGTICSNSPFKGRKRCSEHKGRR 291 8****************************9 PP
2	HRT-like	59.4	5.8e-19	324	354	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGvil d s+C+++P +gRKRCeeHKGmRi AUR62027409-RA 324 ICGVILLDSSPCTKSPFPGRKRCEEHKGMRI 354 8*****************************7 PP
3	HRT-like	42.2	1.4e-13	381	409	2	30
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmR 30 CGv+l+dG +C+rqPvkgRKR e+HKGm AUR62027409-RA 381 CGVNLGDGKCCERQPVKGRKRHEQHKGMH 409 ****************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MGGEPQGLPT PTTTPRLKRE NYRQTKHDTA FSKWKILIGP SDWVNYEAKK EGAERYRVAN 60 LPSVCNPGLY EIGVAVCHSD SGRDVSKLDT EFIVVVYLGQ ADNVRSRLQD YGRNGSHLIN 120 GCGLFKEIFS RGYPIVYRWA PLKSKSDAER TEAKLLERFD YAWNKVNNGV RRPNDVLTKI 180 EKISIRNNKI PKILKMLQSF SERKVGIQIK AEKFSLGNKP SHDIYEENFN LFDRVFKFSR 240 SQPRLVSTNP EAIVEDINKI HICGVISNDG TICSNSPFKG RKRCSEHKGR RLTSVSINSK 300 IMTKDSSTDN SQVENFVNDE FSSICGVILL DSSPCTKSPF PGRKRCEEHK GMRINQIMSK 360 SLIFKSVIEK PLSDPDPADC CGVNLGDGKC CERQPVKGRK RHEQHKGMHV NACV*

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MGGEPQGLPT PTTTPRLKRE NYRQTKHDTA FSKWKILIGP SDWVNYEAKK EGAERYRVAN  60
LPSVCNPGLY EIGVAVCHSD SGRDVSKLDT EFIVVVYLGQ ADNVRSRLQD YGRNGSHLIN  120
GCGLFKEIFS RGYPIVYRWA PLKSKSDAER TEAKLLERFD YAWNKVNNGV RRPNDVLTKI  180
EKISIRNNKI PKILKMLQSF SERKVGIQIK AEKFSLGNKP SHDIYEENFN LFDRVFKFSR  240
SQPRLVSTNP EAIVEDINKI HICGVISNDG TICSNSPFKG RKRCSEHKGR RLTSVSINSK  300
IMTKDSSTDN SQVENFVNDE FSSICGVILL DSSPCTKSPF PGRKRCEEHK GMRINQIMSK  360
SLIFKSVIEK PLSDPDPADC CGVNLGDGKC CERQPVKGRK RHEQHKGMHV NACV*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	1e-99	HRT-like family protein