PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62027204-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

HD-ZIP

Protein Properties

Length: 338aa MW: 38282 Da PI: 4.8494

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62027204-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.3	6.3e-19	56	109	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k AUR62027204-RA 56 KKRRLSVDQVKALERNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 109 566899***********************************************9 PP
2	HD-ZIP_I/II	130.9	5e-42	55	147	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk+++d+lk++ e+L++++++L++e+ke AUR62027204-RA 55 EKKRRLSVDQVKALERNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKASFDNLKQNYESLQHDKDALHKEIKE 147 69****************************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MKRISSSDSL GALISMCPPT DEHSPRNNIY SRDYQSMLDG FDEEGCIEET GHVPEKKRRL 60 SVDQVKALER NFEVENKLEP ERKVKLAQEL GLQPRQVAVW FQNRRARWKT KQLERDYGVL 120 KASFDNLKQN YESLQHDKDA LHKEIKELKS KLSEENVSDS NTHIKEEALI FESDNDHNKK 180 DVELITPLDT LSGGDGGSED AKLLKVNNAF PEFKDGPSDS DSSAILNDDN NSNSPNASNS 240 SSDALFHHPQ QQQLLMSPTS SFRFNCSSSP PPSINCFGFA AETRSDNLAT PQNHNNVYHP 300 QFVKIEEHNF FSGEEACNFF SEEQAPSLHW YCPDQWT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	56	85	KKRRLSVDQVKALERNFEVENKLEPERKVK
2	104	112	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	4e-60	HD-ZIP family protein