PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62026453-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family HD-ZIP
Protein Properties Length: 323aa    MW: 36520.8 Da    PI: 4.8587
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62026453-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.4e-1972124456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++++t+eq+e Le+ F+ ++ +  e++++LAk +gL+ +qV+vWFqNrRa++k
  AUR62026453-RA  72 KRRLTPEQVEFLEKSFNADNRLEPERKAHLAKTIGLQPKQVSVWFQNRRARHK 124
                     5689***********************************************99 PP
2HD-ZIP_I/II115.62.9e-3771161292
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     kkrrl+ eqv++LE+sF+++++LeperK++la+++glqp+qv vWFqnrRAR+ktk +Ek++ +Lk++y++lk   ++L ke+e+L++e++
  AUR62026453-RA  71 KKRRLTPEQVEFLEKSFNADNRLEPERKAHLAKTIGLQPKQVSVWFQNRRARHKTKLVEKEFGSLKDSYNSLKVYYDSLIKENENLKNEVE 161
                     9**************************************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MEGGRVHGGC HDMVSSLENP NNSLWRSSSS AYYGLLVNPK RYREELFAGA FNADDISDDE  60
LDASLFNNSV KKRRLTPEQV EFLEKSFNAD NRLEPERKAH LAKTIGLQPK QVSVWFQNRR  120
ARHKTKLVEK EFGSLKDSYN SLKVYYDSLI KENENLKNEV EMYKNLLKME GRSINSSPIS  180
TPPFEDEGTT KIEPRRKEEI VGLEGVVLQG ARLSEAAKLS EDANSAKSDI LDYDSPPCTV  240
VNQSAAIVEA PSTLIVRDPD QQTDFAQVEN MMMPKSLLLP QSPPTYNNFV NVQNVNENYD  300
PNNANTCNFP MVDNQLNWSW LY*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-34HD-ZIP family protein